miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26213 3' -49.2 NC_005342.2 + 36947 0.66 0.953323
Target:  5'- cCGGGCGCgCUUGgCGAGAUuaCGGGAUUu -3'
miRNA:   3'- -GCCUGCG-GAGC-GUUCUGuaGUUUUAG- -5'
26213 3' -49.2 NC_005342.2 + 16461 0.66 0.953323
Target:  5'- uCGGGCGCaugUCGCAcGACAcgCGAGcgUa -3'
miRNA:   3'- -GCCUGCGg--AGCGUuCUGUa-GUUUuaG- -5'
26213 3' -49.2 NC_005342.2 + 6934 0.66 0.953323
Target:  5'- uCGcGCGCCggGCGAGcucggccuCGUCGAAGUCg -3'
miRNA:   3'- -GCcUGCGGagCGUUCu-------GUAGUUUUAG- -5'
26213 3' -49.2 NC_005342.2 + 35717 0.66 0.953323
Target:  5'- gCGGuCGCCUUGauGGGgAUCAcGAUCa -3'
miRNA:   3'- -GCCuGCGGAGCguUCUgUAGUuUUAG- -5'
26213 3' -49.2 NC_005342.2 + 45919 0.66 0.948652
Target:  5'- aGGACGgCUauacCGCAcucuaccgcgcGGGCGUCGAuguGAUCg -3'
miRNA:   3'- gCCUGCgGA----GCGU-----------UCUGUAGUU---UUAG- -5'
26213 3' -49.2 NC_005342.2 + 2948 0.66 0.948652
Target:  5'- uCGaACGCCUCGagcuuCGGGACGUCGu--UCg -3'
miRNA:   3'- -GCcUGCGGAGC-----GUUCUGUAGUuuuAG- -5'
26213 3' -49.2 NC_005342.2 + 4084 0.66 0.943682
Target:  5'- aGGcGCGCgUCGUcGGAuCGUCGAGAUa -3'
miRNA:   3'- gCC-UGCGgAGCGuUCU-GUAGUUUUAg -5'
26213 3' -49.2 NC_005342.2 + 29541 0.66 0.938407
Target:  5'- -cGACGCCgccgaUCGCGAGGCGUUg----- -3'
miRNA:   3'- gcCUGCGG-----AGCGUUCUGUAGuuuuag -5'
26213 3' -49.2 NC_005342.2 + 21223 0.66 0.932826
Target:  5'- gGGGCGCCgaCGCAAuGgGUCAAGuUCc -3'
miRNA:   3'- gCCUGCGGa-GCGUUcUgUAGUUUuAG- -5'
26213 3' -49.2 NC_005342.2 + 8198 0.67 0.926937
Target:  5'- -uGAUGUCUUGCGAGGCGUCc----- -3'
miRNA:   3'- gcCUGCGGAGCGUUCUGUAGuuuuag -5'
26213 3' -49.2 NC_005342.2 + 10619 0.67 0.926937
Target:  5'- gGGAUGUCgCGCGuGACAUCAu---- -3'
miRNA:   3'- gCCUGCGGaGCGUuCUGUAGUuuuag -5'
26213 3' -49.2 NC_005342.2 + 38999 0.67 0.926937
Target:  5'- uCGGuCGCCgccgCGCAcGGCcgCAcGAUCc -3'
miRNA:   3'- -GCCuGCGGa---GCGUuCUGuaGUuUUAG- -5'
26213 3' -49.2 NC_005342.2 + 16885 0.67 0.926937
Target:  5'- cCGGGCGCC-CGCGuGuuaAUCGugGUCg -3'
miRNA:   3'- -GCCUGCGGaGCGUuCug-UAGUuuUAG- -5'
26213 3' -49.2 NC_005342.2 + 22575 0.67 0.914232
Target:  5'- cCGGACGgUUCGCu-GugGUCGAAc-- -3'
miRNA:   3'- -GCCUGCgGAGCGuuCugUAGUUUuag -5'
26213 3' -49.2 NC_005342.2 + 18414 0.67 0.90742
Target:  5'- --aACGCCUCGCGAucggcGGCGUCGAc--- -3'
miRNA:   3'- gccUGCGGAGCGUU-----CUGUAGUUuuag -5'
26213 3' -49.2 NC_005342.2 + 4634 0.67 0.90742
Target:  5'- aCGGGCagGCCggcgCGCGGGuCuuucuUCAGGAUCg -3'
miRNA:   3'- -GCCUG--CGGa---GCGUUCuGu----AGUUUUAG- -5'
26213 3' -49.2 NC_005342.2 + 3593 0.67 0.90742
Target:  5'- uCGGGCGCCU-GCGGGcCGUagcAGUCg -3'
miRNA:   3'- -GCCUGCGGAgCGUUCuGUAguuUUAG- -5'
26213 3' -49.2 NC_005342.2 + 3121 0.68 0.885176
Target:  5'- gCGcGAuCGCCgCGCAgacAGGCGUCGAGuAUCg -3'
miRNA:   3'- -GC-CU-GCGGaGCGU---UCUGUAGUUU-UAG- -5'
26213 3' -49.2 NC_005342.2 + 39341 0.68 0.885176
Target:  5'- cCGGGCGCCgcgccgaGCucGACGUCGcgcAUCg -3'
miRNA:   3'- -GCCUGCGGag-----CGuuCUGUAGUuu-UAG- -5'
26213 3' -49.2 NC_005342.2 + 27687 0.68 0.877175
Target:  5'- --cGCGCUgcaGCGAGACGUCGuAGGUCa -3'
miRNA:   3'- gccUGCGGag-CGUUCUGUAGU-UUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.