miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26213 5' -50.4 NC_005342.2 + 19469 0.66 0.927053
Target:  5'- --cGCCGCGAcccgCGCGGUCgAcGCGg -3'
miRNA:   3'- ucuUGGCGCUaua-GUGCUAGgUaCGC- -5'
26213 5' -50.4 NC_005342.2 + 35991 0.66 0.914556
Target:  5'- -cGACaCGCGAcGUCcUGcgCCAUGCGa -3'
miRNA:   3'- ucUUG-GCGCUaUAGuGCuaGGUACGC- -5'
26213 5' -50.4 NC_005342.2 + 39007 0.66 0.914556
Target:  5'- --cGCCGCGcacggccgCACGAUCCAgcccGCGc -3'
miRNA:   3'- ucuUGGCGCuaua----GUGCUAGGUa---CGC- -5'
26213 5' -50.4 NC_005342.2 + 23095 0.66 0.90786
Target:  5'- ---uCCGCaAUAUCccguGCGGUUCGUGCGg -3'
miRNA:   3'- ucuuGGCGcUAUAG----UGCUAGGUACGC- -5'
26213 5' -50.4 NC_005342.2 + 11876 0.67 0.886017
Target:  5'- cGAcCUGgGAUAUCACGA-CCgAUGCu -3'
miRNA:   3'- uCUuGGCgCUAUAGUGCUaGG-UACGc -5'
26213 5' -50.4 NC_005342.2 + 19714 0.67 0.870041
Target:  5'- aGGAgcGCCGCGugcgcGUCACGGUcaCCGUGaCGc -3'
miRNA:   3'- -UCU--UGGCGCua---UAGUGCUA--GGUAC-GC- -5'
26213 5' -50.4 NC_005342.2 + 12255 0.68 0.852994
Target:  5'- -cGACCGCGAaccagGUCGCGAgcaCgGUGCu -3'
miRNA:   3'- ucUUGGCGCUa----UAGUGCUa--GgUACGc -5'
26213 5' -50.4 NC_005342.2 + 16502 0.68 0.852994
Target:  5'- cGGGCCGCGAgcgGUgGCGcaacugCCcgGCGu -3'
miRNA:   3'- uCUUGGCGCUa--UAgUGCua----GGuaCGC- -5'
26213 5' -50.4 NC_005342.2 + 18788 0.68 0.84409
Target:  5'- uGAACCGCGcuUAUCGCGcggCCGcaggGCGc -3'
miRNA:   3'- uCUUGGCGCu-AUAGUGCua-GGUa---CGC- -5'
26213 5' -50.4 NC_005342.2 + 35557 0.68 0.84409
Target:  5'- cAGAuacuucGCCGCguuGAUGUCaguGCGAUCCAaGCa -3'
miRNA:   3'- -UCU------UGGCG---CUAUAG---UGCUAGGUaCGc -5'
26213 5' -50.4 NC_005342.2 + 18967 0.68 0.834945
Target:  5'- cGAACCGCGAgaa-GCuGAUCUgcgAUGCGc -3'
miRNA:   3'- uCUUGGCGCUauagUG-CUAGG---UACGC- -5'
26213 5' -50.4 NC_005342.2 + 38774 0.68 0.825569
Target:  5'- cGGACgGCGAguacgCGCGAcUCGUGCGc -3'
miRNA:   3'- uCUUGgCGCUaua--GUGCUaGGUACGC- -5'
26213 5' -50.4 NC_005342.2 + 43324 0.69 0.806166
Target:  5'- aAGAAUCGCuacccggacGAgcUCACGGcCCGUGCGu -3'
miRNA:   3'- -UCUUGGCG---------CUauAGUGCUaGGUACGC- -5'
26213 5' -50.4 NC_005342.2 + 28999 0.7 0.754413
Target:  5'- cGGGCCGCuuugAUCGCG-UCCAUcGCGa -3'
miRNA:   3'- uCUUGGCGcua-UAGUGCuAGGUA-CGC- -5'
26213 5' -50.4 NC_005342.2 + 44397 0.71 0.699284
Target:  5'- cGAucGCCGCGAUGUgGCGcaCUAUGUGg -3'
miRNA:   3'- uCU--UGGCGCUAUAgUGCuaGGUACGC- -5'
26213 5' -50.4 NC_005342.2 + 8161 0.77 0.358176
Target:  5'- uGGAUCGUGAUAUCGCGGUUCuUGCc -3'
miRNA:   3'- uCUUGGCGCUAUAGUGCUAGGuACGc -5'
26213 5' -50.4 NC_005342.2 + 39795 1.11 0.002221
Target:  5'- aAGAACCGCGAUAUCACGAUCCAUGCGg -3'
miRNA:   3'- -UCUUGGCGCUAUAGUGCUAGGUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.