miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26216 3' -58.5 NC_005342.2 + 11501 0.66 0.546694
Target:  5'- aAgGCGUCAUGUCgaGCUUgaugucgaaGCCCgCGUUGc -3'
miRNA:   3'- gUgCGCAGUACAG--CGAG---------CGGG-GCAGC- -5'
26216 3' -58.5 NC_005342.2 + 23814 0.66 0.525827
Target:  5'- uGCG-GUCAUGUCGaUCGCCUCacgCGg -3'
miRNA:   3'- gUGCgCAGUACAGCgAGCGGGGca-GC- -5'
26216 3' -58.5 NC_005342.2 + 30627 0.66 0.519625
Target:  5'- aGCGCGUCGa--CGCUCGCCUucaucgcaacgaucaCGUCc -3'
miRNA:   3'- gUGCGCAGUacaGCGAGCGGG---------------GCAGc -5'
26216 3' -58.5 NC_005342.2 + 671 0.66 0.515506
Target:  5'- aGCGCGaUCGUGcCGC-CGCCCgCGa-- -3'
miRNA:   3'- gUGCGC-AGUACaGCGaGCGGG-GCagc -5'
26216 3' -58.5 NC_005342.2 + 6133 0.66 0.515506
Target:  5'- aCugGCG-CAccUCGCgacaCGCCUCGUCGc -3'
miRNA:   3'- -GugCGCaGUacAGCGa---GCGGGGCAGC- -5'
26216 3' -58.5 NC_005342.2 + 21415 0.66 0.505268
Target:  5'- gGCGCGggcucCGUGcaguUCGC-CGCaCCUGUCGg -3'
miRNA:   3'- gUGCGCa----GUAC----AGCGaGCG-GGGCAGC- -5'
26216 3' -58.5 NC_005342.2 + 3417 0.67 0.495118
Target:  5'- aGCGuCGUcCAUGUC-CUCGCCgagCGUCGc -3'
miRNA:   3'- gUGC-GCA-GUACAGcGAGCGGg--GCAGC- -5'
26216 3' -58.5 NC_005342.2 + 6382 0.67 0.495118
Target:  5'- cCACGCG-CAUG-CGgUCGUgCCGUaCGg -3'
miRNA:   3'- -GUGCGCaGUACaGCgAGCGgGGCA-GC- -5'
26216 3' -58.5 NC_005342.2 + 17461 0.67 0.495118
Target:  5'- aACGuCGUCAUGaCGgUCGCCgCGcCGu -3'
miRNA:   3'- gUGC-GCAGUACaGCgAGCGGgGCaGC- -5'
26216 3' -58.5 NC_005342.2 + 31180 0.67 0.485062
Target:  5'- uGCGCGaaUCugcuUGUCGaUCGCUuuGUCGg -3'
miRNA:   3'- gUGCGC--AGu---ACAGCgAGCGGggCAGC- -5'
26216 3' -58.5 NC_005342.2 + 34125 0.67 0.475105
Target:  5'- gGCGCGcUCaAUG-CGCUCGacgcggcgCCCGUCGc -3'
miRNA:   3'- gUGCGC-AG-UACaGCGAGCg-------GGGCAGC- -5'
26216 3' -58.5 NC_005342.2 + 28333 0.67 0.46525
Target:  5'- --aGCGUCGgccgCGCUCGCCgCGcUCGc -3'
miRNA:   3'- gugCGCAGUaca-GCGAGCGGgGC-AGC- -5'
26216 3' -58.5 NC_005342.2 + 11059 0.67 0.46525
Target:  5'- gCGCGCGUCgugagcggcGUGUCGC-CGCgCUG-CGg -3'
miRNA:   3'- -GUGCGCAG---------UACAGCGaGCGgGGCaGC- -5'
26216 3' -58.5 NC_005342.2 + 18139 0.67 0.445867
Target:  5'- uGCGCGg---GUCGCgcaucgacgCGUUCCGUCGg -3'
miRNA:   3'- gUGCGCaguaCAGCGa--------GCGGGGCAGC- -5'
26216 3' -58.5 NC_005342.2 + 13696 0.68 0.426943
Target:  5'- aGCGCGUCca--UGCUCGUgCCGUUGa -3'
miRNA:   3'- gUGCGCAGuacaGCGAGCGgGGCAGC- -5'
26216 3' -58.5 NC_005342.2 + 5748 0.68 0.426943
Target:  5'- uCACG-GUCGauagccucUCGCauUCGCCCCGUCGc -3'
miRNA:   3'- -GUGCgCAGUac------AGCG--AGCGGGGCAGC- -5'
26216 3' -58.5 NC_005342.2 + 2183 0.68 0.417661
Target:  5'- gUACGCGaUCGUGUaguUGUUCGCCgCGUUc -3'
miRNA:   3'- -GUGCGC-AGUACA---GCGAGCGGgGCAGc -5'
26216 3' -58.5 NC_005342.2 + 45286 0.69 0.381798
Target:  5'- gGCGC-UCAUGgCGCUCgaccaGCCCgGUCGc -3'
miRNA:   3'- gUGCGcAGUACaGCGAG-----CGGGgCAGC- -5'
26216 3' -58.5 NC_005342.2 + 6934 0.69 0.364653
Target:  5'- uCGCGCG-CcgGgcgaGCUCgGCCUCGUCGa -3'
miRNA:   3'- -GUGCGCaGuaCag--CGAG-CGGGGCAGC- -5'
26216 3' -58.5 NC_005342.2 + 19188 0.69 0.339949
Target:  5'- gGCGCGaUCGUGggcggcgcagUGCUCGCgCUCGUCa -3'
miRNA:   3'- gUGCGC-AGUACa---------GCGAGCG-GGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.