miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26217 3' -55 NC_005342.2 + 41679 0.65 0.69829
Target:  5'- cGCAGCcuuucACCaGCGCGcUCGUU-GCGUCa -3'
miRNA:   3'- uCGUUG-----UGGcCGUGU-AGCAGuCGCAG- -5'
26217 3' -55 NC_005342.2 + 35629 0.65 0.69829
Target:  5'- cGCcACAUCGGCgaACAggccgaaGUCAGuCGUCa -3'
miRNA:   3'- uCGuUGUGGCCG--UGUag-----CAGUC-GCAG- -5'
26217 3' -55 NC_005342.2 + 8133 0.65 0.69829
Target:  5'- uGGCGACAggUCGGcCGCGuccaucgcguacUCGgugagCGGCGUCg -3'
miRNA:   3'- -UCGUUGU--GGCC-GUGU------------AGCa----GUCGCAG- -5'
26217 3' -55 NC_005342.2 + 20882 0.65 0.69829
Target:  5'- cGGCGACAagcCCGGCGCAgcgCGUgcuacuUGGCG-Cg -3'
miRNA:   3'- -UCGUUGU---GGCCGUGUa--GCA------GUCGCaG- -5'
26217 3' -55 NC_005342.2 + 10879 0.66 0.687231
Target:  5'- cGCGACGCgGuGCACGUCGcgUAGCc-- -3'
miRNA:   3'- uCGUUGUGgC-CGUGUAGCa-GUCGcag -5'
26217 3' -55 NC_005342.2 + 42974 0.66 0.687231
Target:  5'- cGCGACGgaaGGCACcgUGUCGuCGUCg -3'
miRNA:   3'- uCGUUGUgg-CCGUGuaGCAGUcGCAG- -5'
26217 3' -55 NC_005342.2 + 30347 0.66 0.687231
Target:  5'- cAGCAGCG-CGGCAaggCG-CGGCGUg -3'
miRNA:   3'- -UCGUUGUgGCCGUguaGCaGUCGCAg -5'
26217 3' -55 NC_005342.2 + 15270 0.66 0.687231
Target:  5'- cAGCAucaGCACCgGGCGCuugcCGUCgAGCagGUCg -3'
miRNA:   3'- -UCGU---UGUGG-CCGUGua--GCAG-UCG--CAG- -5'
26217 3' -55 NC_005342.2 + 8754 0.66 0.687231
Target:  5'- uGGCGAaguCGCCGGCAaugccuugCGcCGGCGUg -3'
miRNA:   3'- -UCGUU---GUGGCCGUgua-----GCaGUCGCAg -5'
26217 3' -55 NC_005342.2 + 13806 0.66 0.687231
Target:  5'- cGGCGACgguucggcgACgGGCGCcgCGUCgAGCG-Ca -3'
miRNA:   3'- -UCGUUG---------UGgCCGUGuaGCAG-UCGCaG- -5'
26217 3' -55 NC_005342.2 + 41374 0.66 0.687231
Target:  5'- uGCGACugCGGCGCuggg-CGGCG-Cg -3'
miRNA:   3'- uCGUUGugGCCGUGuagcaGUCGCaG- -5'
26217 3' -55 NC_005342.2 + 19176 0.66 0.687231
Target:  5'- aAGCGcCAggUCGGCGCgAUCGUgGGCGg- -3'
miRNA:   3'- -UCGUuGU--GGCCGUG-UAGCAgUCGCag -5'
26217 3' -55 NC_005342.2 + 1953 0.66 0.676117
Target:  5'- cGGCGAUAUCGuGCcaGUUGUCGGUGUa -3'
miRNA:   3'- -UCGUUGUGGC-CGugUAGCAGUCGCAg -5'
26217 3' -55 NC_005342.2 + 25715 0.66 0.676117
Target:  5'- uGGCuugcuCGCCGGCcagcuGCAggccaGUCGGCGUg -3'
miRNA:   3'- -UCGuu---GUGGCCG-----UGUag---CAGUCGCAg -5'
26217 3' -55 NC_005342.2 + 19541 0.66 0.676117
Target:  5'- aAGCugaugGGCGCCGGuCGCAcgGUCGGCG-Cg -3'
miRNA:   3'- -UCG-----UUGUGGCC-GUGUagCAGUCGCaG- -5'
26217 3' -55 NC_005342.2 + 9683 0.66 0.676117
Target:  5'- cAGCAGCugugucguuGCCGugaGCGCGUCGgacggCAacGCGUCg -3'
miRNA:   3'- -UCGUUG---------UGGC---CGUGUAGCa----GU--CGCAG- -5'
26217 3' -55 NC_005342.2 + 1593 0.66 0.676117
Target:  5'- cGCAu--CCGGgucgaaaGCGUCGUCGGCGg- -3'
miRNA:   3'- uCGUuguGGCCg------UGUAGCAGUCGCag -5'
26217 3' -55 NC_005342.2 + 39202 0.66 0.66496
Target:  5'- aGGCAuuGCCGGCGacuUCGcCAGC-UCg -3'
miRNA:   3'- -UCGUugUGGCCGUgu-AGCaGUCGcAG- -5'
26217 3' -55 NC_005342.2 + 45145 0.66 0.66496
Target:  5'- cGGCGGCGCCgacGGCGCAUucgcgagcauggCGgccaacuaCGGCGUCc -3'
miRNA:   3'- -UCGUUGUGG---CCGUGUA------------GCa-------GUCGCAG- -5'
26217 3' -55 NC_005342.2 + 712 0.66 0.66496
Target:  5'- cGCGccgGCCGGCGCcUCGuUCAGCGn- -3'
miRNA:   3'- uCGUug-UGGCCGUGuAGC-AGUCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.