miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26217 3' -55 NC_005342.2 + 712 0.66 0.66496
Target:  5'- cGCGccgGCCGGCGCcUCGuUCAGCGn- -3'
miRNA:   3'- uCGUug-UGGCCGUGuAGC-AGUCGCag -5'
26217 3' -55 NC_005342.2 + 738 0.74 0.255157
Target:  5'- cGGCAGucgcCGCCGGCGCGUUgcuaGUCGauGCGUCg -3'
miRNA:   3'- -UCGUU----GUGGCCGUGUAG----CAGU--CGCAG- -5'
26217 3' -55 NC_005342.2 + 808 0.7 0.438017
Target:  5'- uGCGGuCGCCuGCGCGUCGcUCGGCG-Cg -3'
miRNA:   3'- uCGUU-GUGGcCGUGUAGC-AGUCGCaG- -5'
26217 3' -55 NC_005342.2 + 1485 0.68 0.575454
Target:  5'- gAGCGACGgcgagUCGGCcuGCAgcgugaUCGUCAGCGg- -3'
miRNA:   3'- -UCGUUGU-----GGCCG--UGU------AGCAGUCGCag -5'
26217 3' -55 NC_005342.2 + 1593 0.66 0.676117
Target:  5'- cGCAu--CCGGgucgaaaGCGUCGUCGGCGg- -3'
miRNA:   3'- uCGUuguGGCCg------UGUAGCAGUCGCag -5'
26217 3' -55 NC_005342.2 + 1925 0.82 0.076964
Target:  5'- cGGCGACACCGGCcgcugcaucgaucuGCugcaguugcgaguUCGUCAGCGUCa -3'
miRNA:   3'- -UCGUUGUGGCCG--------------UGu------------AGCAGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 1953 0.66 0.676117
Target:  5'- cGGCGAUAUCGuGCcaGUUGUCGGUGUa -3'
miRNA:   3'- -UCGUUGUGGC-CGugUAGCAGUCGCAg -5'
26217 3' -55 NC_005342.2 + 2641 0.78 0.128391
Target:  5'- cGGCGACACCGGCAgccUG-CAGCGUCg -3'
miRNA:   3'- -UCGUUGUGGCCGUguaGCaGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 2769 0.68 0.520757
Target:  5'- aAGCGAUugCGcaGCGCGUCGUaGGCGa- -3'
miRNA:   3'- -UCGUUGugGC--CGUGUAGCAgUCGCag -5'
26217 3' -55 NC_005342.2 + 2974 0.67 0.631341
Target:  5'- cGCu-CGCCGGCGCGUcCGcCGGaCGUa -3'
miRNA:   3'- uCGuuGUGGCCGUGUA-GCaGUC-GCAg -5'
26217 3' -55 NC_005342.2 + 3372 0.67 0.607795
Target:  5'- gGGCAgguugucGCGCgCGGCGaucuUCuUCAGCGUCu -3'
miRNA:   3'- -UCGU-------UGUG-GCCGUgu--AGcAGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 3490 0.67 0.597728
Target:  5'- cAGCuGCugCGGCugAUCGgcguaaAGCGg- -3'
miRNA:   3'- -UCGuUGugGCCGugUAGCag----UCGCag -5'
26217 3' -55 NC_005342.2 + 3645 0.68 0.561075
Target:  5'- cGGCAcggugcucucccacACGCCGacCAUcgCGUCGGUGUCg -3'
miRNA:   3'- -UCGU--------------UGUGGCc-GUGuaGCAGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 5032 0.68 0.564385
Target:  5'- uGGcCGACGUCGGCGCggCGcugaaCAGCGUCa -3'
miRNA:   3'- -UC-GUUGUGGCCGUGuaGCa----GUCGCAG- -5'
26217 3' -55 NC_005342.2 + 6264 0.68 0.531552
Target:  5'- uGGCGcggucgcccGCACUGGCgacACGUCaugugcUCAGCGUCg -3'
miRNA:   3'- -UCGU---------UGUGGCCG---UGUAGc-----AGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 6799 0.71 0.398627
Target:  5'- cGGCGGCACUccggcggGGCAC-UCGUCGGCu-- -3'
miRNA:   3'- -UCGUUGUGG-------CCGUGuAGCAGUCGcag -5'
26217 3' -55 NC_005342.2 + 8133 0.65 0.69829
Target:  5'- uGGCGACAggUCGGcCGCGuccaucgcguacUCGgugagCGGCGUCg -3'
miRNA:   3'- -UCGUUGU--GGCC-GUGU------------AGCa----GUCGCAG- -5'
26217 3' -55 NC_005342.2 + 8626 0.69 0.48892
Target:  5'- cGCGGCGcCCGGCuugcucgugACGgugcCGUCGGCGUUc -3'
miRNA:   3'- uCGUUGU-GGCCG---------UGUa---GCAGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 8754 0.66 0.687231
Target:  5'- uGGCGAaguCGCCGGCAaugccuugCGcCGGCGUg -3'
miRNA:   3'- -UCGUU---GUGGCCGUgua-----GCaGUCGCAg -5'
26217 3' -55 NC_005342.2 + 9117 0.74 0.255157
Target:  5'- aAGcCGAUGCCGucGCGCAU-GUCAGCGUCg -3'
miRNA:   3'- -UC-GUUGUGGC--CGUGUAgCAGUCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.