miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26217 3' -55 NC_005342.2 + 41242 1.1 0.00066
Target:  5'- aAGCAACACCGGCACAUCGUCAGCGUCg -3'
miRNA:   3'- -UCGUUGUGGCCGUGUAGCAGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 8626 0.69 0.48892
Target:  5'- cGCGGCGcCCGGCuugcucgugACGgugcCGUCGGCGUUc -3'
miRNA:   3'- uCGUUGU-GGCCG---------UGUa---GCAGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 47466 0.69 0.51005
Target:  5'- cGCu-CGCCGGCACGUCG-C-GCGcCg -3'
miRNA:   3'- uCGuuGUGGCCGUGUAGCaGuCGCaG- -5'
26217 3' -55 NC_005342.2 + 35629 0.65 0.69829
Target:  5'- cGCcACAUCGGCgaACAggccgaaGUCAGuCGUCa -3'
miRNA:   3'- uCGuUGUGGCCG--UGUag-----CAGUC-GCAG- -5'
26217 3' -55 NC_005342.2 + 27630 0.75 0.200576
Target:  5'- cAGCAuuCACgGGCACAgCGUCGGCGa- -3'
miRNA:   3'- -UCGUu-GUGgCCGUGUaGCAGUCGCag -5'
26217 3' -55 NC_005342.2 + 23906 0.75 0.223464
Target:  5'- aAGCcgaa-CGGCGCGUaCGUCAGCGUCu -3'
miRNA:   3'- -UCGuugugGCCGUGUA-GCAGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 20549 0.73 0.275888
Target:  5'- uGGCcGCGCC-GCugAUCGUCGgcGCGUCg -3'
miRNA:   3'- -UCGuUGUGGcCGugUAGCAGU--CGCAG- -5'
26217 3' -55 NC_005342.2 + 11817 0.71 0.381158
Target:  5'- cAGCuuGCGCCGGUACAUCG-CuucCGUCu -3'
miRNA:   3'- -UCGu-UGUGGCCGUGUAGCaGuc-GCAG- -5'
26217 3' -55 NC_005342.2 + 27207 0.7 0.4166
Target:  5'- uGCuuCGCgCGGUACAUCGccgucgugaucgCAGCGUCu -3'
miRNA:   3'- uCGuuGUG-GCCGUGUAGCa-----------GUCGCAG- -5'
26217 3' -55 NC_005342.2 + 32780 0.69 0.468209
Target:  5'- cGGCcacgAGCGCUGGCAacUCgGUCAGCGUg -3'
miRNA:   3'- -UCG----UUGUGGCCGUguAG-CAGUCGCAg -5'
26217 3' -55 NC_005342.2 + 11679 0.7 0.447959
Target:  5'- cGCAGCGCCGG-GCggCGUgcUGGCGUCc -3'
miRNA:   3'- uCGUUGUGGCCgUGuaGCA--GUCGCAG- -5'
26217 3' -55 NC_005342.2 + 32712 0.71 0.398627
Target:  5'- cGCGAguCCGGCGauaccgcUAUCGggaUCGGCGUCg -3'
miRNA:   3'- uCGUUguGGCCGU-------GUAGC---AGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 1925 0.82 0.076964
Target:  5'- cGGCGACACCGGCcgcugcaucgaucuGCugcaguugcgaguUCGUCAGCGUCa -3'
miRNA:   3'- -UCGUUGUGGCCG--------------UGu------------AGCAGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 18411 0.7 0.458024
Target:  5'- cGCAACGCCucGCG-AUCGgCGGCGUCg -3'
miRNA:   3'- uCGUUGUGGc-CGUgUAGCaGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 47695 0.79 0.124786
Target:  5'- cGGCAAgcUGCuCGGCGCgcugGUCGUCGGCGUCa -3'
miRNA:   3'- -UCGUU--GUG-GCCGUG----UAGCAGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 6799 0.71 0.398627
Target:  5'- cGGCGGCACUccggcggGGCAC-UCGUCGGCu-- -3'
miRNA:   3'- -UCGUUGUGG-------CCGUGuAGCAGUCGcag -5'
26217 3' -55 NC_005342.2 + 33155 0.69 0.468209
Target:  5'- cGCGAguCCGGCAgCAUUGgCAGCGg- -3'
miRNA:   3'- uCGUUguGGCCGU-GUAGCaGUCGCag -5'
26217 3' -55 NC_005342.2 + 17279 0.69 0.499435
Target:  5'- cGUgAACGCCGGC-CggCG-CAGCGUCc -3'
miRNA:   3'- uCG-UUGUGGCCGuGuaGCaGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 2641 0.78 0.128391
Target:  5'- cGGCGACACCGGCAgccUG-CAGCGUCg -3'
miRNA:   3'- -UCGUUGUGGCCGUguaGCaGUCGCAG- -5'
26217 3' -55 NC_005342.2 + 12260 0.74 0.268832
Target:  5'- -aCGGCACCGGCggcgcGCAUUG-CGGCGUCc -3'
miRNA:   3'- ucGUUGUGGCCG-----UGUAGCaGUCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.