miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26217 5' -54 NC_005342.2 + 9791 0.66 0.766974
Target:  5'- cGCGuCGCGCcacggaucgacaaagUUCGACGCGgCAagCGUc -3'
miRNA:   3'- -UGCuGCGCG---------------AAGUUGCGCgGUaaGCA- -5'
26217 5' -54 NC_005342.2 + 1389 0.66 0.762821
Target:  5'- cACGGCGuCGaugagCAGCuuGUGCCGUUCGa -3'
miRNA:   3'- -UGCUGC-GCgaa--GUUG--CGCGGUAAGCa -5'
26217 5' -54 NC_005342.2 + 13678 0.66 0.762821
Target:  5'- gACGACGUGaCgaacgaUAGCGCGuCCAUgcUCGUg -3'
miRNA:   3'- -UGCUGCGC-Gaa----GUUGCGC-GGUA--AGCA- -5'
26217 5' -54 NC_005342.2 + 20207 0.66 0.762821
Target:  5'- cGCGGCucGCGCuUUCGugGCGgCGaUCGa -3'
miRNA:   3'- -UGCUG--CGCG-AAGUugCGCgGUaAGCa -5'
26217 5' -54 NC_005342.2 + 11899 0.66 0.752344
Target:  5'- aGCGGCGCGCgcgcCAuuacGCGCGCUccaggcggUCGa -3'
miRNA:   3'- -UGCUGCGCGaa--GU----UGCGCGGua------AGCa -5'
26217 5' -54 NC_005342.2 + 6675 0.66 0.752344
Target:  5'- uGCGGgGCGCauuggCGACGaGCCAUgCGUg -3'
miRNA:   3'- -UGCUgCGCGaa---GUUGCgCGGUAaGCA- -5'
26217 5' -54 NC_005342.2 + 35803 0.66 0.752344
Target:  5'- gUGACGCgGCgcu-GCGCGCCAgccaCGUa -3'
miRNA:   3'- uGCUGCG-CGaaguUGCGCGGUaa--GCA- -5'
26217 5' -54 NC_005342.2 + 10783 0.66 0.752344
Target:  5'- gGCGA-GCGCcggaaugUCG--GCGCCGUUCGUc -3'
miRNA:   3'- -UGCUgCGCGa------AGUugCGCGGUAAGCA- -5'
26217 5' -54 NC_005342.2 + 9117 0.66 0.749175
Target:  5'- cACGuCGCGCUUugccugcucgaccgCAgcuGCGCGCUugcGUUCGUu -3'
miRNA:   3'- -UGCuGCGCGAA--------------GU---UGCGCGG---UAAGCA- -5'
26217 5' -54 NC_005342.2 + 797 0.66 0.741738
Target:  5'- gGCGACGUaGCUgcggUCGccuGCGCGUCGcUCGg -3'
miRNA:   3'- -UGCUGCG-CGA----AGU---UGCGCGGUaAGCa -5'
26217 5' -54 NC_005342.2 + 30952 0.66 0.741738
Target:  5'- gACGGCcGCGCggCGcaGCGCCGUcUCGg -3'
miRNA:   3'- -UGCUG-CGCGaaGUugCGCGGUA-AGCa -5'
26217 5' -54 NC_005342.2 + 25402 0.66 0.741738
Target:  5'- gGCGAuCGCGCUUgCAGUGUGCCgg-CGg -3'
miRNA:   3'- -UGCU-GCGCGAA-GUUGCGCGGuaaGCa -5'
26217 5' -54 NC_005342.2 + 44430 0.66 0.741738
Target:  5'- cCGACGCGCU---GCGCGgCAccgCGUu -3'
miRNA:   3'- uGCUGCGCGAaguUGCGCgGUaa-GCA- -5'
26217 5' -54 NC_005342.2 + 6230 0.66 0.741738
Target:  5'- gGCcGCGCGCUUC-ACGCGCac--CGa -3'
miRNA:   3'- -UGcUGCGCGAAGuUGCGCGguaaGCa -5'
26217 5' -54 NC_005342.2 + 750 0.66 0.741738
Target:  5'- cCGGCGCGUUgcuagUCGAUGCGUCGaaCGg -3'
miRNA:   3'- uGCUGCGCGA-----AGUUGCGCGGUaaGCa -5'
26217 5' -54 NC_005342.2 + 4643 0.66 0.741738
Target:  5'- cCGGCGCGCgggucuuucUUCAGgauCGUGCCAU-CGg -3'
miRNA:   3'- uGCUGCGCG---------AAGUU---GCGCGGUAaGCa -5'
26217 5' -54 NC_005342.2 + 9613 0.66 0.741738
Target:  5'- gGCGGCGCGCcu--GCGCccgGCUGUUUGUu -3'
miRNA:   3'- -UGCUGCGCGaaguUGCG---CGGUAAGCA- -5'
26217 5' -54 NC_005342.2 + 20120 0.66 0.740672
Target:  5'- aGCGACGUGCUgaaAGCGaucugcaCGCCGgcuggcUUCGUg -3'
miRNA:   3'- -UGCUGCGCGAag-UUGC-------GCGGU------AAGCA- -5'
26217 5' -54 NC_005342.2 + 29522 0.66 0.740672
Target:  5'- uUGaACGCGCUcgcggugUCGACGCcGCCGaUCGc -3'
miRNA:   3'- uGC-UGCGCGA-------AGUUGCG-CGGUaAGCa -5'
26217 5' -54 NC_005342.2 + 27733 0.66 0.73532
Target:  5'- cGCGGCGCGaaucuggUCGGCcgccgagcccgucagGCGCaCGUUCGUc -3'
miRNA:   3'- -UGCUGCGCga-----AGUUG---------------CGCG-GUAAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.