miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26217 5' -54 NC_005342.2 + 13 0.7 0.48892
Target:  5'- cUGACGCgGCaagUCuAGCGCGCC-UUCGUa -3'
miRNA:   3'- uGCUGCG-CGa--AG-UUGCGCGGuAAGCA- -5'
26217 5' -54 NC_005342.2 + 39 0.7 0.499435
Target:  5'- cACGuGCGCGUUUCu-CGCGCCucacauacGUUCGUu -3'
miRNA:   3'- -UGC-UGCGCGAAGuuGCGCGG--------UAAGCA- -5'
26217 5' -54 NC_005342.2 + 487 0.72 0.41852
Target:  5'- cACGGCGCGC---GACGUGCCGgcgagCGUg -3'
miRNA:   3'- -UGCUGCGCGaagUUGCGCGGUaa---GCA- -5'
26217 5' -54 NC_005342.2 + 750 0.66 0.741738
Target:  5'- cCGGCGCGUUgcuagUCGAUGCGUCGaaCGg -3'
miRNA:   3'- uGCUGCGCGA-----AGUUGCGCGGUaaGCa -5'
26217 5' -54 NC_005342.2 + 797 0.66 0.741738
Target:  5'- gGCGACGUaGCUgcggUCGccuGCGCGUCGcUCGg -3'
miRNA:   3'- -UGCUGCG-CGA----AGU---UGCGCGGUaAGCa -5'
26217 5' -54 NC_005342.2 + 849 0.67 0.709282
Target:  5'- cUGGCGCGCUggcggCAGCuGCaGCCuugUCGg -3'
miRNA:   3'- uGCUGCGCGAa----GUUG-CG-CGGua-AGCa -5'
26217 5' -54 NC_005342.2 + 1078 0.71 0.458024
Target:  5'- gGCGcACGCuGCggCGGCGCGCCAaaugCGUc -3'
miRNA:   3'- -UGC-UGCG-CGaaGUUGCGCGGUaa--GCA- -5'
26217 5' -54 NC_005342.2 + 1235 0.7 0.531552
Target:  5'- cAUGACGUGCUccUUGGCGCGCCGc---- -3'
miRNA:   3'- -UGCUGCGCGA--AGUUGCGCGGUaagca -5'
26217 5' -54 NC_005342.2 + 1389 0.66 0.762821
Target:  5'- cACGGCGuCGaugagCAGCuuGUGCCGUUCGa -3'
miRNA:   3'- -UGCUGC-GCgaa--GUUG--CGCGGUAAGCa -5'
26217 5' -54 NC_005342.2 + 1452 0.68 0.642561
Target:  5'- gACGGCaCGCUUgGACGUGCCGa---- -3'
miRNA:   3'- -UGCUGcGCGAAgUUGCGCGGUaagca -5'
26217 5' -54 NC_005342.2 + 2418 0.69 0.591029
Target:  5'- uACGGCGCgGCgaaCAcuuGCGCGCCAaacgaagccgcguugUUCGUg -3'
miRNA:   3'- -UGCUGCG-CGaa-GU---UGCGCGGU---------------AAGCA- -5'
26217 5' -54 NC_005342.2 + 2884 0.66 0.720196
Target:  5'- -aGACGUGCU---GCGCGgCcgUCGUa -3'
miRNA:   3'- ugCUGCGCGAaguUGCGCgGuaAGCA- -5'
26217 5' -54 NC_005342.2 + 3219 0.69 0.572128
Target:  5'- aGCGccACGCGCggucgagcggccggaCAGCGCGCCGUgguagaUCGUa -3'
miRNA:   3'- -UGC--UGCGCGaa-------------GUUGCGCGGUA------AGCA- -5'
26217 5' -54 NC_005342.2 + 4643 0.66 0.741738
Target:  5'- cCGGCGCGCgggucuuucUUCAGgauCGUGCCAU-CGg -3'
miRNA:   3'- uGCUGCGCG---------AAGUU---GCGCGGUAaGCa -5'
26217 5' -54 NC_005342.2 + 4788 0.71 0.447959
Target:  5'- uGCGGCGCGCa--AGCGCGCgAUgcgcgCGUc -3'
miRNA:   3'- -UGCUGCGCGaagUUGCGCGgUAa----GCA- -5'
26217 5' -54 NC_005342.2 + 6230 0.66 0.741738
Target:  5'- gGCcGCGCGCUUC-ACGCGCac--CGa -3'
miRNA:   3'- -UGcUGCGCGAAGuUGCGCGguaaGCa -5'
26217 5' -54 NC_005342.2 + 6498 0.69 0.575454
Target:  5'- cCGGCGCGCgagUCGccCGCGCCGaUCu- -3'
miRNA:   3'- uGCUGCGCGa--AGUu-GCGCGGUaAGca -5'
26217 5' -54 NC_005342.2 + 6575 0.67 0.687231
Target:  5'- cACGGCGCGCcgCccaGCGCCGcagUCGc -3'
miRNA:   3'- -UGCUGCGCGaaGuugCGCGGUa--AGCa -5'
26217 5' -54 NC_005342.2 + 6615 0.67 0.69829
Target:  5'- uCGAuCGCGCUcggCAGCGCGCUcggCGc -3'
miRNA:   3'- uGCU-GCGCGAa--GUUGCGCGGuaaGCa -5'
26217 5' -54 NC_005342.2 + 6675 0.66 0.752344
Target:  5'- uGCGGgGCGCauuggCGACGaGCCAUgCGUg -3'
miRNA:   3'- -UGCUgCGCGaa---GUUGCgCGGUAaGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.