miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26217 5' -54 NC_005342.2 + 41268 0.9 0.023863
Target:  5'- cGCGAUGCucacgaccgGCUUCAACGCGCCAUUCGUu -3'
miRNA:   3'- -UGCUGCG---------CGAAGUUGCGCGGUAAGCA- -5'
26217 5' -54 NC_005342.2 + 23229 0.7 0.51005
Target:  5'- cACGGCG-GCg--AACGCGCCggUCGUg -3'
miRNA:   3'- -UGCUGCgCGaagUUGCGCGGuaAGCA- -5'
26217 5' -54 NC_005342.2 + 25113 0.69 0.542426
Target:  5'- cACGGCGaGCacggCGGCGCGCaCGUUCGc -3'
miRNA:   3'- -UGCUGCgCGaa--GUUGCGCG-GUAAGCa -5'
26217 5' -54 NC_005342.2 + 20207 0.66 0.762821
Target:  5'- cGCGGCucGCGCuUUCGugGCGgCGaUCGa -3'
miRNA:   3'- -UGCUG--CGCG-AAGUugCGCgGUaAGCa -5'
26217 5' -54 NC_005342.2 + 8900 0.73 0.337691
Target:  5'- cGCGACGCgGCUUCGuuCGCGCCGg---- -3'
miRNA:   3'- -UGCUGCG-CGAAGUu-GCGCGGUaagca -5'
26217 5' -54 NC_005342.2 + 14209 0.73 0.354635
Target:  5'- gACGGCGUGCgc--GCGCGCCucuUUCGa -3'
miRNA:   3'- -UGCUGCGCGaaguUGCGCGGu--AAGCa -5'
26217 5' -54 NC_005342.2 + 15440 0.72 0.390288
Target:  5'- uCGACGCGCUU-GGCGUGCCGagCGc -3'
miRNA:   3'- uGCUGCGCGAAgUUGCGCGGUaaGCa -5'
26217 5' -54 NC_005342.2 + 46415 0.72 0.390288
Target:  5'- gGCGGCGCGCUaCAAaaaGCuGCCggUCGa -3'
miRNA:   3'- -UGCUGCGCGAaGUUg--CG-CGGuaAGCa -5'
26217 5' -54 NC_005342.2 + 12268 0.72 0.41852
Target:  5'- gGCGGCGCGCauugcggcgUCcuGCGCGCCAgccUCGc -3'
miRNA:   3'- -UGCUGCGCGa--------AGu-UGCGCGGUa--AGCa -5'
26217 5' -54 NC_005342.2 + 18174 0.7 0.499435
Target:  5'- cCGGCGUGCcgggUGAUGCGCUcgUCGUg -3'
miRNA:   3'- uGCUGCGCGaa--GUUGCGCGGuaAGCA- -5'
26217 5' -54 NC_005342.2 + 13 0.7 0.48892
Target:  5'- cUGACGCgGCaagUCuAGCGCGCC-UUCGUa -3'
miRNA:   3'- uGCUGCG-CGa--AG-UUGCGCGGuAAGCA- -5'
26217 5' -54 NC_005342.2 + 9514 0.72 0.41852
Target:  5'- uCGACGagcuGCUUCAGCGCGgcaCCAaUCGUg -3'
miRNA:   3'- uGCUGCg---CGAAGUUGCGC---GGUaAGCA- -5'
26217 5' -54 NC_005342.2 + 23607 0.79 0.143796
Target:  5'- aGCGAUGCGCgcgaccuggUUCAACGCGCCGUUg-- -3'
miRNA:   3'- -UGCUGCGCG---------AAGUUGCGCGGUAAgca -5'
26217 5' -54 NC_005342.2 + 9714 0.7 0.48892
Target:  5'- gGCGACaugaGCGCcggauGCGCGCCcgUCGUc -3'
miRNA:   3'- -UGCUG----CGCGaagu-UGCGCGGuaAGCA- -5'
26217 5' -54 NC_005342.2 + 27427 0.77 0.206099
Target:  5'- gGCGACG-GCUgUCGACcagGCGCCAUUCGg -3'
miRNA:   3'- -UGCUGCgCGA-AGUUG---CGCGGUAAGCa -5'
26217 5' -54 NC_005342.2 + 39047 0.72 0.408972
Target:  5'- gGCGGCGCGCUUCuACGaCGCaccgcaggCAUUCa- -3'
miRNA:   3'- -UGCUGCGCGAAGuUGC-GCG--------GUAAGca -5'
26217 5' -54 NC_005342.2 + 44749 0.7 0.499435
Target:  5'- cGCGugGCGCUggCGGCGCGCaga-CGc -3'
miRNA:   3'- -UGCugCGCGAa-GUUGCGCGguaaGCa -5'
26217 5' -54 NC_005342.2 + 1235 0.7 0.531552
Target:  5'- cAUGACGUGCUccUUGGCGCGCCGc---- -3'
miRNA:   3'- -UGCUGCGCGA--AGUUGCGCGGUaagca -5'
26217 5' -54 NC_005342.2 + 11805 0.74 0.313393
Target:  5'- gACGGCGCGCUcCAGCuuGCGCCGguacaUCGc -3'
miRNA:   3'- -UGCUGCGCGAaGUUG--CGCGGUa----AGCa -5'
26217 5' -54 NC_005342.2 + 25213 0.73 0.36333
Target:  5'- uCGACGC-CcgCGACGCuGCCAUUCGg -3'
miRNA:   3'- uGCUGCGcGaaGUUGCG-CGGUAAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.