Results 1 - 20 of 141 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 38540 | 0.66 | 0.328608 |
Target: 5'- cGC-GCaaGACGGCGaaccgGACGGCGUgCGc -3' miRNA: 3'- -CGaCGggCUGCCGUg----CUGCCGCGgGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 22457 | 0.66 | 0.328608 |
Target: 5'- cCUGCCCGA-GGCuCGugaacAUGGUGUCCa -3' miRNA: 3'- cGACGGGCUgCCGuGC-----UGCCGCGGGc -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 39818 | 0.66 | 0.328608 |
Target: 5'- uGCgGCCaaGGCGGCAUGAUGGCacGCUUc -3' miRNA: 3'- -CGaCGGg-CUGCCGUGCUGCCG--CGGGc -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 9852 | 0.66 | 0.328608 |
Target: 5'- -gUGgCCGGCGuCACGcCGGCGCacCCGa -3' miRNA: 3'- cgACgGGCUGCcGUGCuGCCGCG--GGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 6495 | 0.66 | 0.328608 |
Target: 5'- --aGCCCGGC-GCGCGA-GuCGCCCGc -3' miRNA: 3'- cgaCGGGCUGcCGUGCUgCcGCGGGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 20564 | 0.66 | 0.328608 |
Target: 5'- --gGCaaacaUGACGGCACGGCcgucGCGCCgGg -3' miRNA: 3'- cgaCGg----GCUGCCGUGCUGc---CGCGGgC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 15489 | 0.66 | 0.328608 |
Target: 5'- -aUGgCCGGCGGCAgCGACcuGCGCgUGa -3' miRNA: 3'- cgACgGGCUGCCGU-GCUGc-CGCGgGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 30661 | 0.66 | 0.321097 |
Target: 5'- --cGUCCGGCGaUACGcCGGCGgCCGu -3' miRNA: 3'- cgaCGGGCUGCcGUGCuGCCGCgGGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 30942 | 0.66 | 0.321097 |
Target: 5'- uGCcgGUCgCGACGGC-CGcGCGGCGCagcgCCGu -3' miRNA: 3'- -CGa-CGG-GCUGCCGuGC-UGCCGCG----GGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 20216 | 0.66 | 0.321097 |
Target: 5'- --gGCUCGGCGGC-CGACcagauucGCGCCgCGa -3' miRNA: 3'- cgaCGGGCUGCCGuGCUGc------CGCGG-GC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 36253 | 0.66 | 0.321097 |
Target: 5'- gGCUGCCgGACaucgcGCAgGACGccagcacgcCGCCCGg -3' miRNA: 3'- -CGACGGgCUGc----CGUgCUGCc--------GCGGGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 2766 | 0.66 | 0.321097 |
Target: 5'- cCUGCUCgGGCGGCAgGugGaCGCCg- -3' miRNA: 3'- cGACGGG-CUGCCGUgCugCcGCGGgc -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 14879 | 0.66 | 0.321097 |
Target: 5'- gGCaGCa-GGCGuucCACGACGGCGCgCCGu -3' miRNA: 3'- -CGaCGggCUGCc--GUGCUGCCGCG-GGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 2029 | 0.66 | 0.321097 |
Target: 5'- aGC-GCCUGGCgcugauccGGCGCGAgacGCGCCCa -3' miRNA: 3'- -CGaCGGGCUG--------CCGUGCUgc-CGCGGGc -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 28030 | 0.66 | 0.318868 |
Target: 5'- cGCcGCCCGGCGcGCucgucgucgaugauGCgGACGGCGCg-- -3' miRNA: 3'- -CGaCGGGCUGC-CG--------------UG-CUGCCGCGggc -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 28206 | 0.66 | 0.313714 |
Target: 5'- aGCgGCCgaucgcgucguUGACGGCA--GCGGCGCCg- -3' miRNA: 3'- -CGaCGG-----------GCUGCCGUgcUGCCGCGGgc -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 33898 | 0.66 | 0.313714 |
Target: 5'- -aUGCCC--UGGUACGAUGcgacugguacuGCGCCCGu -3' miRNA: 3'- cgACGGGcuGCCGUGCUGC-----------CGCGGGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 27747 | 0.66 | 0.313714 |
Target: 5'- cGCcGCCaCGAaaGCGCGAgCcGCGCCCa -3' miRNA: 3'- -CGaCGG-GCUgcCGUGCU-GcCGCGGGc -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 38035 | 0.66 | 0.313714 |
Target: 5'- uGCgGUUCGACGGCaaacaccuGCG-CGGCGaCCUGc -3' miRNA: 3'- -CGaCGGGCUGCCG--------UGCuGCCGC-GGGC- -5' |
|||||||
26218 | 3' | -63.6 | NC_005342.2 | + | 9321 | 0.66 | 0.313714 |
Target: 5'- -gUGUUCGucguCGGCGCG-CGGCGUCgGg -3' miRNA: 3'- cgACGGGCu---GCCGUGCuGCCGCGGgC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home