miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26218 3' -63.6 NC_005342.2 + 41528 1.1 0.000128
Target:  5'- aGCUGCCCGACGGCACGACGGCGCCCGg -3'
miRNA:   3'- -CGACGGGCUGCCGUGCUGCCGCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 38506 0.81 0.023838
Target:  5'- aGCaGCUCGGCGGCGguGCGGCGCCCGc -3'
miRNA:   3'- -CGaCGGGCUGCCGUgcUGCCGCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 9606 0.81 0.024514
Target:  5'- gGCUG-CCGGCGGCGCGcCuGCGCCCGg -3'
miRNA:   3'- -CGACgGGCUGCCGUGCuGcCGCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 44754 0.8 0.029809
Target:  5'- uGCUGCCCGGCgucaucggGGCG-GGCGGCGCgCCGg -3'
miRNA:   3'- -CGACGGGCUG--------CCGUgCUGCCGCG-GGC- -5'
26218 3' -63.6 NC_005342.2 + 44100 0.78 0.041622
Target:  5'- cGCUGCUCGGCGGCGCGcgcucgcuacaACGGCuuGCCgGg -3'
miRNA:   3'- -CGACGGGCUGCCGUGC-----------UGCCG--CGGgC- -5'
26218 3' -63.6 NC_005342.2 + 27437 0.78 0.042792
Target:  5'- gGCcGCCagCGaACGGCGCGGCGGCGgCCGg -3'
miRNA:   3'- -CGaCGG--GC-UGCCGUGCUGCCGCgGGC- -5'
26218 3' -63.6 NC_005342.2 + 17903 0.78 0.043994
Target:  5'- aGCUGUCCGcCGGUGCGGcCGcGCGCCUGg -3'
miRNA:   3'- -CGACGGGCuGCCGUGCU-GC-CGCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 12262 0.76 0.05487
Target:  5'- --gGCaCCGGCGGCGCGcauuGCGGCGUCCu -3'
miRNA:   3'- cgaCG-GGCUGCCGUGC----UGCCGCGGGc -5'
26218 3' -63.6 NC_005342.2 + 2357 0.76 0.056402
Target:  5'- gGCguaGCCCauGACGGCGcCGGCGGuCGCCUGg -3'
miRNA:   3'- -CGa--CGGG--CUGCCGU-GCUGCC-GCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 22859 0.75 0.068338
Target:  5'- cGCgGCCCGGCgaucGGCGCGAucguacUGGCGCUCGu -3'
miRNA:   3'- -CGaCGGGCUG----CCGUGCU------GCCGCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 44728 0.75 0.074982
Target:  5'- cGCUGUCCGGCcgcucgaccgcgcguGGCGCuGGCGGCGCgCa -3'
miRNA:   3'- -CGACGGGCUG---------------CCGUG-CUGCCGCGgGc -5'
26218 3' -63.6 NC_005342.2 + 30132 0.74 0.084961
Target:  5'- --cGCgCCGAUGGCGCGACGGauuuuaaGUCCGc -3'
miRNA:   3'- cgaCG-GGCUGCCGUGCUGCCg------CGGGC- -5'
26218 3' -63.6 NC_005342.2 + 7257 0.74 0.087292
Target:  5'- uCUGCgCGACGGCgaACGggcggaagaucACGGCGCCCc -3'
miRNA:   3'- cGACGgGCUGCCG--UGC-----------UGCCGCGGGc -5'
26218 3' -63.6 NC_005342.2 + 28402 0.74 0.087292
Target:  5'- uGCcGCgCCGACcGUGCGAcCGGCGCCCa -3'
miRNA:   3'- -CGaCG-GGCUGcCGUGCU-GCCGCGGGc -5'
26218 3' -63.6 NC_005342.2 + 33118 0.74 0.089684
Target:  5'- -aUGCCUG-CGGCGCGGCGacuGCGCgCCGa -3'
miRNA:   3'- cgACGGGCuGCCGUGCUGC---CGCG-GGC- -5'
26218 3' -63.6 NC_005342.2 + 32067 0.73 0.094656
Target:  5'- cGCUGCCCGauagcgugcGCaGCACGACGuucaGCGCCgCGu -3'
miRNA:   3'- -CGACGGGC---------UGcCGUGCUGC----CGCGG-GC- -5'
26218 3' -63.6 NC_005342.2 + 47700 0.73 0.097238
Target:  5'- aGCUGCUCGGCGcGCugGucguCGGCGUCa- -3'
miRNA:   3'- -CGACGGGCUGC-CGugCu---GCCGCGGgc -5'
26218 3' -63.6 NC_005342.2 + 32675 0.73 0.097238
Target:  5'- cCUGCUCGACGGCAa----GCGCCCGg -3'
miRNA:   3'- cGACGGGCUGCCGUgcugcCGCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 34219 0.73 0.099888
Target:  5'- cGCcGCgCGAgCGGCGCG-CGGCGUCCu -3'
miRNA:   3'- -CGaCGgGCU-GCCGUGCuGCCGCGGGc -5'
26218 3' -63.6 NC_005342.2 + 42830 0.73 0.102605
Target:  5'- cGCUGCUCGACaaCACgGGCGGCucGCCCGu -3'
miRNA:   3'- -CGACGGGCUGccGUG-CUGCCG--CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.