miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26218 3' -63.6 NC_005342.2 + 95 0.66 0.306461
Target:  5'- -aUGCCgGcGCGGUGCG-C-GCGCCCGg -3'
miRNA:   3'- cgACGGgC-UGCCGUGCuGcCGCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 593 0.66 0.292341
Target:  5'- -gUGCCCGACaGCGgGcCGGUGCUg- -3'
miRNA:   3'- cgACGGGCUGcCGUgCuGCCGCGGgc -5'
26218 3' -63.6 NC_005342.2 + 784 0.66 0.292341
Target:  5'- gGC-GCCCGcgaGCGGCgACGuagcuGCGGuCGCCUGc -3'
miRNA:   3'- -CGaCGGGC---UGCCG-UGC-----UGCC-GCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 1308 0.67 0.253044
Target:  5'- gGCUGCgCGcgaugcuucGCGGCGCucGCGGCGCUg- -3'
miRNA:   3'- -CGACGgGC---------UGCCGUGc-UGCCGCGGgc -5'
26218 3' -63.6 NC_005342.2 + 1880 0.69 0.187532
Target:  5'- --gGCCgCGccaaauccgcaGCGGCGCauaACGGCGCCCGc -3'
miRNA:   3'- cgaCGG-GC-----------UGCCGUGc--UGCCGCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 2029 0.66 0.321097
Target:  5'- aGC-GCCUGGCgcugauccGGCGCGAgacGCGCCCa -3'
miRNA:   3'- -CGaCGGGCUG--------CCGUGCUgc-CGCGGGc -5'
26218 3' -63.6 NC_005342.2 + 2357 0.76 0.056402
Target:  5'- gGCguaGCCCauGACGGCGcCGGCGGuCGCCUGg -3'
miRNA:   3'- -CGa--CGGG--CUGCCGU-GCUGCC-GCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 2621 0.68 0.212803
Target:  5'- cGC-GCUCGcCGGCGuauCGGCGGCGacaCCGg -3'
miRNA:   3'- -CGaCGGGCuGCCGU---GCUGCCGCg--GGC- -5'
26218 3' -63.6 NC_005342.2 + 2651 0.66 0.299336
Target:  5'- gGCaGCCUGcaGCGucGCGcCGGCGGCGgCCGa -3'
miRNA:   3'- -CGaCGGGC--UGC--CGU-GCUGCCGCgGGC- -5'
26218 3' -63.6 NC_005342.2 + 2766 0.66 0.321097
Target:  5'- cCUGCUCgGGCGGCAgGugGaCGCCg- -3'
miRNA:   3'- cGACGGG-CUGCCGUgCugCcGCGGgc -5'
26218 3' -63.6 NC_005342.2 + 3174 0.66 0.306461
Target:  5'- cUUGCCCGggcGCGGC-CGcGCGGUGUUCa -3'
miRNA:   3'- cGACGGGC---UGCCGuGC-UGCCGCGGGc -5'
26218 3' -63.6 NC_005342.2 + 3306 0.66 0.292341
Target:  5'- aGCUGCCgacuucuuCGGCGcGCGCGACGcaucgagacGCaGCUCGa -3'
miRNA:   3'- -CGACGG--------GCUGC-CGUGCUGC---------CG-CGGGC- -5'
26218 3' -63.6 NC_005342.2 + 3628 0.69 0.178186
Target:  5'- uGCUcGCgCGGCGGCAgCGgcACGGUGCUCu -3'
miRNA:   3'- -CGA-CGgGCUGCCGU-GC--UGCCGCGGGc -5'
26218 3' -63.6 NC_005342.2 + 3888 0.7 0.169256
Target:  5'- aGC-GCCaGGCGGCAgCGGCGGCaGgCCGa -3'
miRNA:   3'- -CGaCGGgCUGCCGU-GCUGCCG-CgGGC- -5'
26218 3' -63.6 NC_005342.2 + 4933 0.66 0.288205
Target:  5'- gGCgucgGCUCGAuCGGCACGagcgcauagccggccGggauCGGCGCCCc -3'
miRNA:   3'- -CGa---CGGGCU-GCCGUGC---------------U----GCCGCGGGc -5'
26218 3' -63.6 NC_005342.2 + 6405 0.69 0.207525
Target:  5'- -aUGCCCGACcGCucGCGGCcgGGCGCCg- -3'
miRNA:   3'- cgACGGGCUGcCG--UGCUG--CCGCGGgc -5'
26218 3' -63.6 NC_005342.2 + 6495 0.66 0.328608
Target:  5'- --aGCCCGGC-GCGCGA-GuCGCCCGc -3'
miRNA:   3'- cgaCGGGCUGcCGUGCUgCcGCGGGC- -5'
26218 3' -63.6 NC_005342.2 + 7257 0.74 0.087292
Target:  5'- uCUGCgCGACGGCgaACGggcggaagaucACGGCGCCCc -3'
miRNA:   3'- cGACGgGCUGCCG--UGC-----------UGCCGCGGGc -5'
26218 3' -63.6 NC_005342.2 + 8355 0.7 0.160728
Target:  5'- uGCU-CCUGcguuuucgguuGCGGCACGuACGGCGCCg- -3'
miRNA:   3'- -CGAcGGGC-----------UGCCGUGC-UGCCGCGGgc -5'
26218 3' -63.6 NC_005342.2 + 8606 0.69 0.197308
Target:  5'- -aUGCgCGACGucgaGCuCGgcGCGGCGCCCGg -3'
miRNA:   3'- cgACGgGCUGC----CGuGC--UGCCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.