miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26219 5' -56.8 NC_005342.2 + 19493 0.66 0.591778
Target:  5'- gGCGCucgggCAGUUGCUGGccgaccUGCguuucuACGGCAUGc -3'
miRNA:   3'- aCGCG-----GUCAACGGCC------ACG------UGCUGUAC- -5'
26219 5' -56.8 NC_005342.2 + 40656 0.66 0.591778
Target:  5'- cGaCGCCAca-GUCGGUcGCACGGCAg- -3'
miRNA:   3'- aC-GCGGUcaaCGGCCA-CGUGCUGUac -5'
26219 5' -56.8 NC_005342.2 + 40565 0.66 0.591778
Target:  5'- cGCGCCuucuGGUcGCCGGcgauggucGCGCGACu-- -3'
miRNA:   3'- aCGCGG----UCAaCGGCCa-------CGUGCUGuac -5'
26219 5' -56.8 NC_005342.2 + 32023 0.66 0.591778
Target:  5'- gUGCGUCAGcagGUCGGUcacgagcgcguGCACGGCu-- -3'
miRNA:   3'- -ACGCGGUCaa-CGGCCA-----------CGUGCUGuac -5'
26219 5' -56.8 NC_005342.2 + 35702 0.66 0.588466
Target:  5'- cGCGCC----GCCGGUGCcguguacguugucgACGGCAa- -3'
miRNA:   3'- aCGCGGucaaCGGCCACG--------------UGCUGUac -5'
26219 5' -56.8 NC_005342.2 + 5011 0.66 0.580752
Target:  5'- gGCgGCCAGgcgGCCGGcuguugGC-CGACGUc -3'
miRNA:   3'- aCG-CGGUCaa-CGGCCa-----CGuGCUGUAc -5'
26219 5' -56.8 NC_005342.2 + 44162 0.66 0.580752
Target:  5'- gGCGCUuGgccUGCCGGUGCAgaaaGAUAc- -3'
miRNA:   3'- aCGCGGuCa--ACGGCCACGUg---CUGUac -5'
26219 5' -56.8 NC_005342.2 + 3219 0.66 0.580752
Target:  5'- aGCGCCacgcgcggucgAGcgGCCGGacaGCGCGcCGUGg -3'
miRNA:   3'- aCGCGG-----------UCaaCGGCCa--CGUGCuGUAC- -5'
26219 5' -56.8 NC_005342.2 + 18063 0.66 0.580752
Target:  5'- gUGCGCgAGUccgGCuUGGUGCccuCGGCGUa -3'
miRNA:   3'- -ACGCGgUCAa--CG-GCCACGu--GCUGUAc -5'
26219 5' -56.8 NC_005342.2 + 47818 0.66 0.580752
Target:  5'- cGCGCCAGgcGCCGaucguGUGCucgcgccgaaucACGACu-- -3'
miRNA:   3'- aCGCGGUCaaCGGC-----CACG------------UGCUGuac -5'
26219 5' -56.8 NC_005342.2 + 45669 0.66 0.580752
Target:  5'- -cCGCCAGUucaacgcgggcgUGCCGGccacggcGCACGACcUGc -3'
miRNA:   3'- acGCGGUCA------------ACGGCCa------CGUGCUGuAC- -5'
26219 5' -56.8 NC_005342.2 + 19340 0.66 0.569769
Target:  5'- cGCGCCGGccugcGCCGa-GCGCGAcCGUGc -3'
miRNA:   3'- aCGCGGUCaa---CGGCcaCGUGCU-GUAC- -5'
26219 5' -56.8 NC_005342.2 + 25476 0.66 0.569769
Target:  5'- cGCGgCGacUGCCGGguUGCGCGuCAUGa -3'
miRNA:   3'- aCGCgGUcaACGGCC--ACGUGCuGUAC- -5'
26219 5' -56.8 NC_005342.2 + 38824 0.66 0.558838
Target:  5'- aGCGCgCAGcUG-CGGUcgagcaggcaaaGCGCGACGUGc -3'
miRNA:   3'- aCGCG-GUCaACgGCCA------------CGUGCUGUAC- -5'
26219 5' -56.8 NC_005342.2 + 38995 0.66 0.558838
Target:  5'- cGCGUCGGUcGCCGccgcGCACGGCc-- -3'
miRNA:   3'- aCGCGGUCAaCGGCca--CGUGCUGuac -5'
26219 5' -56.8 NC_005342.2 + 38085 0.66 0.547967
Target:  5'- cGCGCUgucgcgUGUCgGGUGCGcCGGCGUGa -3'
miRNA:   3'- aCGCGGuca---ACGG-CCACGU-GCUGUAC- -5'
26219 5' -56.8 NC_005342.2 + 9045 0.66 0.547967
Target:  5'- aUGCGCgGGccgugcUGCCGGUGCAgCGcgcGCAg- -3'
miRNA:   3'- -ACGCGgUCa-----ACGGCCACGU-GC---UGUac -5'
26219 5' -56.8 NC_005342.2 + 44924 0.66 0.544719
Target:  5'- cGCGCCAcgaagcccggccacGUgcuUGUCGGUGC-CGACcUGu -3'
miRNA:   3'- aCGCGGU--------------CA---ACGGCCACGuGCUGuAC- -5'
26219 5' -56.8 NC_005342.2 + 26047 0.66 0.537163
Target:  5'- gUGCGCCGGauUUGCCaGUGgCGCcGCAg- -3'
miRNA:   3'- -ACGCGGUC--AACGGcCAC-GUGcUGUac -5'
26219 5' -56.8 NC_005342.2 + 36071 0.66 0.537163
Target:  5'- cGCGCCGcugcgcaUGCCGGgccGCgACGACAa- -3'
miRNA:   3'- aCGCGGUca-----ACGGCCa--CG-UGCUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.