miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2622 3' -58.4 NC_001491.2 + 5286 0.71 0.494531
Target:  5'- gGAGUggaccaucUUCAGCAUcGCGGcGAGCCCCg -3'
miRNA:   3'- aCUCG--------GGGUCGUAuCGUCaCUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 47127 0.71 0.494531
Target:  5'- --cGCCCCAGCA-GGCGcuccaGAGCCCUg -3'
miRNA:   3'- acuCGGGGUCGUaUCGUca---CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 87001 0.71 0.475565
Target:  5'- aUGAGCUCCAGCuguuUGGCGGUGAcGUUg- -3'
miRNA:   3'- -ACUCGGGGUCGu---AUCGUCACU-CGGgg -5'
2622 3' -58.4 NC_001491.2 + 148891 0.71 0.475565
Target:  5'- uUGGGaaaCCCAGCGaguugggaaaucUAGUGGgcUGGGCCCCa -3'
miRNA:   3'- -ACUCg--GGGUCGU------------AUCGUC--ACUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 3428 0.71 0.466218
Target:  5'- gGAGCCCaGGCGgugGGUAGggucaGAGUCCCc -3'
miRNA:   3'- aCUCGGGgUCGUa--UCGUCa----CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 2251 0.72 0.438767
Target:  5'- aGGGCCgCCAGCAgcGCcGaGAGUCCCc -3'
miRNA:   3'- aCUCGG-GGUCGUauCGuCaCUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 115429 0.72 0.43697
Target:  5'- cGGGCUCCAGCGUGGauaucguugucGUGuAGUCCCg -3'
miRNA:   3'- aCUCGGGGUCGUAUCgu---------CAC-UCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 146203 0.73 0.403652
Target:  5'- -uGGCCaCCgAGCAUAGCGuGUGuagcGCCCCg -3'
miRNA:   3'- acUCGG-GG-UCGUAUCGU-CACu---CGGGG- -5'
2622 3' -58.4 NC_001491.2 + 39447 0.73 0.386774
Target:  5'- cGGGCCCCAGUcgccUGGguGcuGGCCCCc -3'
miRNA:   3'- aCUCGGGGUCGu---AUCguCacUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 1356 0.73 0.362344
Target:  5'- cGGGCUCCGGCAggcacAGCuccGUG-GCCCCc -3'
miRNA:   3'- aCUCGGGGUCGUa----UCGu--CACuCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 3023 0.74 0.354443
Target:  5'- cUGGGUggCCCGGCAgcaggUGGCGGUcGuAGCCCCg -3'
miRNA:   3'- -ACUCG--GGGUCGU-----AUCGUCA-C-UCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 59166 0.74 0.339008
Target:  5'- gUGAGCUCUAaacGCcucgcGGUGGUGAGCCCCg -3'
miRNA:   3'- -ACUCGGGGU---CGua---UCGUCACUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 32785 0.75 0.316781
Target:  5'- -cGGCCCCGGCGgcGGCuucGUGcGCCCCg -3'
miRNA:   3'- acUCGGGGUCGUa-UCGu--CACuCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 2688 0.75 0.309621
Target:  5'- gGGGCCCuCGGC-UGGCA-UGGGUCCCa -3'
miRNA:   3'- aCUCGGG-GUCGuAUCGUcACUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 149673 0.8 0.148837
Target:  5'- ------nCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- acucgggGUCGUAUCGUCACUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 35958 0.8 0.141399
Target:  5'- cGAGCCCCGGCGUGGCcca-GGCCCUc -3'
miRNA:   3'- aCUCGGGGUCGUAUCGucacUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 149360 1.12 0.000873
Target:  5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 149612 1.12 0.000873
Target:  5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 149576 1.12 0.000873
Target:  5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 149540 1.12 0.000873
Target:  5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.