miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26220 3' -58.7 NC_005342.2 + 702 0.66 0.571778
Target:  5'- ----aUGUaCUggUCGCGCCGGCCGGCGc -3'
miRNA:   3'- ggcuaGCA-GA--GGUGCGGCCGGCUGCu -5'
26220 3' -58.7 NC_005342.2 + 39385 0.66 0.570728
Target:  5'- gCCGAggcggcgCGcUUCCugGUCGGCCugccugcgccacuGACGAc -3'
miRNA:   3'- -GGCUa------GCaGAGGugCGGCCGG-------------CUGCU- -5'
26220 3' -58.7 NC_005342.2 + 26290 0.66 0.561305
Target:  5'- aCCGcgcCGUCgaugCGaaaGCCGGUCGACGAc -3'
miRNA:   3'- -GGCua-GCAGag--GUg--CGGCCGGCUGCU- -5'
26220 3' -58.7 NC_005342.2 + 32770 0.66 0.550885
Target:  5'- aCGGcCGUCUgaCCGgccugcUGCCGGCCGuGCGGa -3'
miRNA:   3'- gGCUaGCAGA--GGU------GCGGCCGGC-UGCU- -5'
26220 3' -58.7 NC_005342.2 + 27529 0.66 0.550885
Target:  5'- gUCGAUCGcaagugCCGCGCCGG--GGCGAa -3'
miRNA:   3'- -GGCUAGCaga---GGUGCGGCCggCUGCU- -5'
26220 3' -58.7 NC_005342.2 + 29542 0.66 0.550885
Target:  5'- gCGAUCGg--CgCGcCGCCGGUCGACu- -3'
miRNA:   3'- gGCUAGCagaG-GU-GCGGCCGGCUGcu -5'
26220 3' -58.7 NC_005342.2 + 44585 0.66 0.549846
Target:  5'- aCCGAag--CUCCcgcgacgacggcgACGCCGGUCGACa- -3'
miRNA:   3'- -GGCUagcaGAGG-------------UGCGGCCGGCUGcu -5'
26220 3' -58.7 NC_005342.2 + 10969 0.66 0.540526
Target:  5'- aUCGAcgUCGUCggaaagaGCGCCGcGCCGuACGGg -3'
miRNA:   3'- -GGCU--AGCAGagg----UGCGGC-CGGC-UGCU- -5'
26220 3' -58.7 NC_005342.2 + 20229 0.66 0.540526
Target:  5'- gCGAUCGa--CCGCGaCUGGCCuACGAu -3'
miRNA:   3'- gGCUAGCagaGGUGC-GGCCGGcUGCU- -5'
26220 3' -58.7 NC_005342.2 + 24595 0.66 0.530232
Target:  5'- gCCGGUCGggUUCGCGCuCGuaCCGAUGAa -3'
miRNA:   3'- -GGCUAGCagAGGUGCG-GCc-GGCUGCU- -5'
26220 3' -58.7 NC_005342.2 + 11325 0.66 0.530232
Target:  5'- gCGGuUCGUCgucaCCuuGCCGcGCuCGACGAg -3'
miRNA:   3'- gGCU-AGCAGa---GGugCGGC-CG-GCUGCU- -5'
26220 3' -58.7 NC_005342.2 + 35657 0.66 0.530232
Target:  5'- gCGAaCGUCaacCCGCGCgaGGCUGGCGc -3'
miRNA:   3'- gGCUaGCAGa--GGUGCGg-CCGGCUGCu -5'
26220 3' -58.7 NC_005342.2 + 35521 0.66 0.530232
Target:  5'- cCCGggCGU------GCCGGCCGACGAc -3'
miRNA:   3'- -GGCuaGCAgaggugCGGCCGGCUGCU- -5'
26220 3' -58.7 NC_005342.2 + 29356 0.67 0.509868
Target:  5'- gCCGcccgCGcCUgCCGCGCCGGUCGuuuguugcACGAa -3'
miRNA:   3'- -GGCua--GCaGA-GGUGCGGCCGGC--------UGCU- -5'
26220 3' -58.7 NC_005342.2 + 29399 0.67 0.509868
Target:  5'- uUCGGauUCGcCgCCGCGCCGGCUGcCGc -3'
miRNA:   3'- -GGCU--AGCaGaGGUGCGGCCGGCuGCu -5'
26220 3' -58.7 NC_005342.2 + 10726 0.67 0.509868
Target:  5'- aCGAcUGaUCUUCACGUggccgUGGCCGGCGGc -3'
miRNA:   3'- gGCUaGC-AGAGGUGCG-----GCCGGCUGCU- -5'
26220 3' -58.7 NC_005342.2 + 23207 0.67 0.508859
Target:  5'- gCGAUCGUCgCCGCGUucgugagCGGCUucucgaccgauGACGGg -3'
miRNA:   3'- gGCUAGCAGaGGUGCG-------GCCGG-----------CUGCU- -5'
26220 3' -58.7 NC_005342.2 + 10635 0.67 0.499809
Target:  5'- gUGA-CGUCacggUCGCGCCGGCCGGu-- -3'
miRNA:   3'- gGCUaGCAGa---GGUGCGGCCGGCUgcu -5'
26220 3' -58.7 NC_005342.2 + 20510 0.67 0.499809
Target:  5'- gCCGGcCGcCgCCGCGCCGuucGCUGGCGGc -3'
miRNA:   3'- -GGCUaGCaGaGGUGCGGC---CGGCUGCU- -5'
26220 3' -58.7 NC_005342.2 + 45290 0.67 0.499809
Target:  5'- gCCuGUCGg--CCGcCGCCGGCgCGACGc -3'
miRNA:   3'- -GGcUAGCagaGGU-GCGGCCG-GCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.