Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26220 | 3' | -58.7 | NC_005342.2 | + | 702 | 0.66 | 0.571778 |
Target: 5'- ----aUGUaCUggUCGCGCCGGCCGGCGc -3' miRNA: 3'- ggcuaGCA-GA--GGUGCGGCCGGCUGCu -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 29542 | 0.66 | 0.550885 |
Target: 5'- gCGAUCGg--CgCGcCGCCGGUCGACu- -3' miRNA: 3'- gGCUAGCagaG-GU-GCGGCCGGCUGcu -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 27529 | 0.66 | 0.550885 |
Target: 5'- gUCGAUCGcaagugCCGCGCCGG--GGCGAa -3' miRNA: 3'- -GGCUAGCaga---GGUGCGGCCggCUGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 39385 | 0.66 | 0.570728 |
Target: 5'- gCCGAggcggcgCGcUUCCugGUCGGCCugccugcgccacuGACGAc -3' miRNA: 3'- -GGCUa------GCaGAGGugCGGCCGG-------------CUGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 11325 | 0.66 | 0.530232 |
Target: 5'- gCGGuUCGUCgucaCCuuGCCGcGCuCGACGAg -3' miRNA: 3'- gGCU-AGCAGa---GGugCGGC-CG-GCUGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 20229 | 0.66 | 0.540526 |
Target: 5'- gCGAUCGa--CCGCGaCUGGCCuACGAu -3' miRNA: 3'- gGCUAGCagaGGUGC-GGCCGGcUGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 24595 | 0.66 | 0.530232 |
Target: 5'- gCCGGUCGggUUCGCGCuCGuaCCGAUGAa -3' miRNA: 3'- -GGCUAGCagAGGUGCG-GCc-GGCUGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 26290 | 0.66 | 0.561305 |
Target: 5'- aCCGcgcCGUCgaugCGaaaGCCGGUCGACGAc -3' miRNA: 3'- -GGCua-GCAGag--GUg--CGGCCGGCUGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 35521 | 0.66 | 0.530232 |
Target: 5'- cCCGggCGU------GCCGGCCGACGAc -3' miRNA: 3'- -GGCuaGCAgaggugCGGCCGGCUGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 32770 | 0.66 | 0.550885 |
Target: 5'- aCGGcCGUCUgaCCGgccugcUGCCGGCCGuGCGGa -3' miRNA: 3'- gGCUaGCAGA--GGU------GCGGCCGGC-UGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 35657 | 0.66 | 0.530232 |
Target: 5'- gCGAaCGUCaacCCGCGCgaGGCUGGCGc -3' miRNA: 3'- gGCUaGCAGa--GGUGCGg-CCGGCUGCu -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 44585 | 0.66 | 0.549846 |
Target: 5'- aCCGAag--CUCCcgcgacgacggcgACGCCGGUCGACa- -3' miRNA: 3'- -GGCUagcaGAGG-------------UGCGGCCGGCUGcu -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 10969 | 0.66 | 0.540526 |
Target: 5'- aUCGAcgUCGUCggaaagaGCGCCGcGCCGuACGGg -3' miRNA: 3'- -GGCU--AGCAGagg----UGCGGC-CGGC-UGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 47224 | 0.67 | 0.479963 |
Target: 5'- gCCGGcggCGaCUgCCgcgcugaacgagGCGCCGGCCGGCGc -3' miRNA: 3'- -GGCUa--GCaGA-GG------------UGCGGCCGGCUGCu -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 30931 | 0.67 | 0.479963 |
Target: 5'- gCCGGUUGUCaugccggUCGCGaCGGCCGcGCGGc -3' miRNA: 3'- -GGCUAGCAGa------GGUGCgGCCGGC-UGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 18356 | 0.67 | 0.470185 |
Target: 5'- cCCGAUCG-CgcaGCGCUucGCCGACGAc -3' miRNA: 3'- -GGCUAGCaGaggUGCGGc-CGGCUGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 45424 | 0.67 | 0.479963 |
Target: 5'- gCCGAUCGUCU-CGCGUucgCGGCCuggaacaGCGGu -3' miRNA: 3'- -GGCUAGCAGAgGUGCG---GCCGGc------UGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 40174 | 0.67 | 0.489839 |
Target: 5'- gCUGAacuacUCG--UCCGCGCuCGGCCuGGCGAa -3' miRNA: 3'- -GGCU-----AGCagAGGUGCG-GCCGG-CUGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 30547 | 0.67 | 0.489839 |
Target: 5'- uUGAUCGUCagCGCGUCguGGCCGcgcuguGCGAg -3' miRNA: 3'- gGCUAGCAGagGUGCGG--CCGGC------UGCU- -5' |
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26220 | 3' | -58.7 | NC_005342.2 | + | 23207 | 0.67 | 0.508859 |
Target: 5'- gCGAUCGUCgCCGCGUucgugagCGGCUucucgaccgauGACGGg -3' miRNA: 3'- gGCUAGCAGaGGUGCG-------GCCGG-----------CUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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