miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26221 3' -53.8 NC_005342.2 + 29863 0.66 0.802441
Target:  5'- cCCGAAUGcgGACGuaGCGCGcUCGcAGAg -3'
miRNA:   3'- -GGCUUGCa-CUGCggCGUGU-AGC-UCUg -5'
26221 3' -53.8 NC_005342.2 + 22297 0.66 0.802441
Target:  5'- aCGAACGUccaauCGUCGgACAgaccCGAGGCg -3'
miRNA:   3'- gGCUUGCAcu---GCGGCgUGUa---GCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 36833 0.66 0.802441
Target:  5'- gCgGGGCGUGcucgaagcgcucACGCCGCACGaCGcGAUc -3'
miRNA:   3'- -GgCUUGCAC------------UGCGGCGUGUaGCuCUG- -5'
26221 3' -53.8 NC_005342.2 + 22533 0.66 0.802441
Target:  5'- -aGAACGUGAUGuuGCcgaGCGaCGAGcGCg -3'
miRNA:   3'- ggCUUGCACUGCggCG---UGUaGCUC-UG- -5'
26221 3' -53.8 NC_005342.2 + 46731 0.66 0.802441
Target:  5'- -gGAgcACGUcAUGCCGUugAUCGaAGGCa -3'
miRNA:   3'- ggCU--UGCAcUGCGGCGugUAGC-UCUG- -5'
26221 3' -53.8 NC_005342.2 + 19353 0.66 0.802441
Target:  5'- gCCGAGCGcGACcguGCgGCACGagcgcUCGAG-Cg -3'
miRNA:   3'- -GGCUUGCaCUG---CGgCGUGU-----AGCUCuG- -5'
26221 3' -53.8 NC_005342.2 + 15851 0.66 0.792705
Target:  5'- gCGAGCGaGcCGCCGUGaccgcCAUCGuAGACg -3'
miRNA:   3'- gGCUUGCaCuGCGGCGU-----GUAGC-UCUG- -5'
26221 3' -53.8 NC_005342.2 + 45859 0.66 0.782799
Target:  5'- gCCGAAC-UGcagcGCGCCGaau-UCGAGGCg -3'
miRNA:   3'- -GGCUUGcAC----UGCGGCguguAGCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 17439 0.66 0.782799
Target:  5'- cCCGGGCGccgGAUGUgGCGCAacgCGaAGGCc -3'
miRNA:   3'- -GGCUUGCa--CUGCGgCGUGUa--GC-UCUG- -5'
26221 3' -53.8 NC_005342.2 + 23167 0.66 0.782799
Target:  5'- aCCGAACGUG-C-CCGCaaccuACAUCcaGGACa -3'
miRNA:   3'- -GGCUUGCACuGcGGCG-----UGUAGc-UCUG- -5'
26221 3' -53.8 NC_005342.2 + 20638 0.66 0.772735
Target:  5'- gCGAGCGUcgcaacGGCGCUGCGCcaguggcagGAGGCg -3'
miRNA:   3'- gGCUUGCA------CUGCGGCGUGuag------CUCUG- -5'
26221 3' -53.8 NC_005342.2 + 19244 0.66 0.772735
Target:  5'- gCUGGACGUGACGaacaUGCACGcaucCGGcGACc -3'
miRNA:   3'- -GGCUUGCACUGCg---GCGUGUa---GCU-CUG- -5'
26221 3' -53.8 NC_005342.2 + 5234 0.66 0.772735
Target:  5'- gUCGAACGUGAUGCgauacgggggcgUGCuCAUC-AGGCg -3'
miRNA:   3'- -GGCUUGCACUGCG------------GCGuGUAGcUCUG- -5'
26221 3' -53.8 NC_005342.2 + 38969 0.66 0.772735
Target:  5'- cCCGAGCGgccggcaGGCGCaCGCGCG-CGcGAUc -3'
miRNA:   3'- -GGCUUGCa------CUGCG-GCGUGUaGCuCUG- -5'
26221 3' -53.8 NC_005342.2 + 34446 0.66 0.772735
Target:  5'- gCCGccGGCGgcaACGCCGCgagcACGUCG-GACg -3'
miRNA:   3'- -GGC--UUGCac-UGCGGCG----UGUAGCuCUG- -5'
26221 3' -53.8 NC_005342.2 + 2513 0.66 0.772735
Target:  5'- aUCGGcACGUucGCGCCGgGC-UCGAGAUg -3'
miRNA:   3'- -GGCU-UGCAc-UGCGGCgUGuAGCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 45022 0.66 0.772735
Target:  5'- aCGGGCGUcACGCuCGCGCAgcugCaGGGCu -3'
miRNA:   3'- gGCUUGCAcUGCG-GCGUGUa---GcUCUG- -5'
26221 3' -53.8 NC_005342.2 + 32999 0.66 0.77172
Target:  5'- gCCGAGCGcacGCGuuGCgucggccGCAUCGAGcCa -3'
miRNA:   3'- -GGCUUGCac-UGCggCG-------UGUAGCUCuG- -5'
26221 3' -53.8 NC_005342.2 + 38686 0.66 0.766625
Target:  5'- cCCGuguuCGUGAaccgGCCgaucgacccgaacugGCAUGUCGAGGCg -3'
miRNA:   3'- -GGCuu--GCACUg---CGG---------------CGUGUAGCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 674 0.66 0.762524
Target:  5'- gCGAuCGUGcCGCCGC-CcgCGAG-Cg -3'
miRNA:   3'- gGCUuGCACuGCGGCGuGuaGCUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.