miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26221 3' -53.8 NC_005342.2 + 42781 1.12 0.000846
Target:  5'- gCCGAACGUGACGCCGCACAUCGAGACg -3'
miRNA:   3'- -GGCUUGCACUGCGGCGUGUAGCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 40548 0.78 0.188816
Target:  5'- gCCGucuCGUGcagcucuggGCGCCGCGCGUCGaAGGCa -3'
miRNA:   3'- -GGCuu-GCAC---------UGCGGCGUGUAGC-UCUG- -5'
26221 3' -53.8 NC_005342.2 + 38107 0.78 0.19875
Target:  5'- gCCG-GCGUGACGCCGgcCACGgucaagacggcgaUCGAGACg -3'
miRNA:   3'- -GGCuUGCACUGCGGC--GUGU-------------AGCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 8680 0.75 0.302199
Target:  5'- gCCGAcCGUGACGCCGC---UCGAGuCc -3'
miRNA:   3'- -GGCUuGCACUGCGGCGuguAGCUCuG- -5'
26221 3' -53.8 NC_005342.2 + 39352 0.74 0.333611
Target:  5'- gCCGAGCucGACGUCGCGCAUCGGc-- -3'
miRNA:   3'- -GGCUUGcaCUGCGGCGUGUAGCUcug -5'
26221 3' -53.8 NC_005342.2 + 22755 0.73 0.367349
Target:  5'- gCGGGCGUcGACGUcgaguCGCGCAgugaguUCGAGACg -3'
miRNA:   3'- gGCUUGCA-CUGCG-----GCGUGU------AGCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 22326 0.73 0.407082
Target:  5'- aCCGAACugacGACGCCGCaagggcagcucgcaaGCAgCGAGGCg -3'
miRNA:   3'- -GGCUUGca--CUGCGGCG---------------UGUaGCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 13722 0.73 0.412706
Target:  5'- gUCGAGCGcguagGACGCCGCGCGccgcUCGcgcGGCg -3'
miRNA:   3'- -GGCUUGCa----CUGCGGCGUGU----AGCu--CUG- -5'
26221 3' -53.8 NC_005342.2 + 26865 0.72 0.422184
Target:  5'- aCCGAcggcguuCGUGAaGCCGCACGUCGcauaguuGGCg -3'
miRNA:   3'- -GGCUu------GCACUgCGGCGUGUAGCu------CUG- -5'
26221 3' -53.8 NC_005342.2 + 11055 0.72 0.426012
Target:  5'- aCCGGcgcgcgucgugagcgGCGUGuCGCCGCGCugCGGGAUg -3'
miRNA:   3'- -GGCU---------------UGCACuGCGGCGUGuaGCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 17310 0.71 0.471454
Target:  5'- gCCGGACGUGAuCGuuGCgaugaaggcgaGCGUCGAcGCg -3'
miRNA:   3'- -GGCUUGCACU-GCggCG-----------UGUAGCUcUG- -5'
26221 3' -53.8 NC_005342.2 + 39059 0.71 0.481656
Target:  5'- gCGAACGaagccGCGUCGCGCAUCGAcGCc -3'
miRNA:   3'- gGCUUGCac---UGCGGCGUGUAGCUcUG- -5'
26221 3' -53.8 NC_005342.2 + 14236 0.71 0.502375
Target:  5'- gCCGAGCGgcgGcACGCCuucgaGCAUCGGGAa -3'
miRNA:   3'- -GGCUUGCa--C-UGCGGcg---UGUAGCUCUg -5'
26221 3' -53.8 NC_005342.2 + 11973 0.71 0.502375
Target:  5'- -gGAcucGCGUGuCGCUGCAUGUCGuGGCu -3'
miRNA:   3'- ggCU---UGCACuGCGGCGUGUAGCuCUG- -5'
26221 3' -53.8 NC_005342.2 + 38725 0.71 0.523474
Target:  5'- aCGAAgGcuAUGCCGCACGcggCGAGGCg -3'
miRNA:   3'- gGCUUgCacUGCGGCGUGUa--GCUCUG- -5'
26221 3' -53.8 NC_005342.2 + 15692 0.7 0.544903
Target:  5'- -gGGACGaUGACGCCGUgcuucACGUCGAaGCc -3'
miRNA:   3'- ggCUUGC-ACUGCGGCG-----UGUAGCUcUG- -5'
26221 3' -53.8 NC_005342.2 + 9213 0.7 0.544903
Target:  5'- gCCGAACGggGGCGCCuCGCcgCGugcGGCa -3'
miRNA:   3'- -GGCUUGCa-CUGCGGcGUGuaGCu--CUG- -5'
26221 3' -53.8 NC_005342.2 + 25021 0.7 0.553555
Target:  5'- gCCGAACGguucgaccuauACGCUGCACAacUCGAGcgGCa -3'
miRNA:   3'- -GGCUUGCac---------UGCGGCGUGU--AGCUC--UG- -5'
26221 3' -53.8 NC_005342.2 + 2940 0.7 0.566608
Target:  5'- gCGAGCGUGACGCCcGUcaACGgaaugcCGuAGACg -3'
miRNA:   3'- gGCUUGCACUGCGG-CG--UGUa-----GC-UCUG- -5'
26221 3' -53.8 NC_005342.2 + 44745 0.7 0.566608
Target:  5'- aCCGcGCGUGGCGCUG-GCGgcgCGcAGACg -3'
miRNA:   3'- -GGCuUGCACUGCGGCgUGUa--GC-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.