miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26221 5' -56 NC_005342.2 + 3319 0.69 0.441527
Target:  5'- ----uUCGGCGCGc-GCGACGCaUCGAg -3'
miRNA:   3'- cucauAGCCGCGCucCGUUGCG-AGCU- -5'
26221 5' -56 NC_005342.2 + 4211 0.66 0.610597
Target:  5'- cGAGaacAUCGGCGUGAGGaugccgcgcACGUUCGu -3'
miRNA:   3'- -CUCa--UAGCCGCGCUCCgu-------UGCGAGCu -5'
26221 5' -56 NC_005342.2 + 4324 0.69 0.451384
Target:  5'- uGGGUAUCGGUGCGcuacGUGGCGUUUGGu -3'
miRNA:   3'- -CUCAUAGCCGCGCuc--CGUUGCGAGCU- -5'
26221 5' -56 NC_005342.2 + 5527 0.71 0.341828
Target:  5'- -cGgcUUGGCGCGAGuGCAGaccguucaGCUCGAu -3'
miRNA:   3'- cuCauAGCCGCGCUC-CGUUg-------CGAGCU- -5'
26221 5' -56 NC_005342.2 + 5570 0.66 0.610597
Target:  5'- gGAGacgAUCGGCGCuGuuGCGGgcUGCUCGAc -3'
miRNA:   3'- -CUCa--UAGCCGCG-CucCGUU--GCGAGCU- -5'
26221 5' -56 NC_005342.2 + 9362 0.67 0.566608
Target:  5'- -----gCGGCGCGggugcgcggacGGGCGGCGUUCGu -3'
miRNA:   3'- cucauaGCCGCGC-----------UCCGUUGCGAGCu -5'
26221 5' -56 NC_005342.2 + 10618 0.66 0.640494
Target:  5'- cGGGaUGUCGcGCGUGAcaucaugcagcaccGGCGACGaUUCGAa -3'
miRNA:   3'- -CUC-AUAGC-CGCGCU--------------CCGUUGC-GAGCU- -5'
26221 5' -56 NC_005342.2 + 13226 0.69 0.441527
Target:  5'- uGGUGuUCGGCGCGAccGGCAAUGgUaCGGc -3'
miRNA:   3'- cUCAU-AGCCGCGCU--CCGUUGCgA-GCU- -5'
26221 5' -56 NC_005342.2 + 17118 0.67 0.577545
Target:  5'- cGGgcUCGcGCGCGA-GCAGCaGCUCGc -3'
miRNA:   3'- cUCauAGC-CGCGCUcCGUUG-CGAGCu -5'
26221 5' -56 NC_005342.2 + 17811 0.72 0.287369
Target:  5'- -----gUGGCGCGAGGCAGuCGCUaCGGc -3'
miRNA:   3'- cucauaGCCGCGCUCCGUU-GCGA-GCU- -5'
26221 5' -56 NC_005342.2 + 18264 0.67 0.566608
Target:  5'- ----uUCGGCGCuGGcGGCAgcgcggccGCGCUCGGc -3'
miRNA:   3'- cucauAGCCGCG-CU-CCGU--------UGCGAGCU- -5'
26221 5' -56 NC_005342.2 + 19184 0.7 0.385076
Target:  5'- ---gGUCGGCGCGAucgugGGCGgcgcagugcucGCGCUCGu -3'
miRNA:   3'- cucaUAGCCGCGCU-----CCGU-----------UGCGAGCu -5'
26221 5' -56 NC_005342.2 + 19489 0.71 0.350191
Target:  5'- ---gAUCGGCGCuggcgcgcuGGCGGCGCUCGu -3'
miRNA:   3'- cucaUAGCCGCGcu-------CCGUUGCGAGCu -5'
26221 5' -56 NC_005342.2 + 20715 0.74 0.239974
Target:  5'- cGAGgcGUCGGCGC-AGGCAgACGCUgCGAu -3'
miRNA:   3'- -CUCa-UAGCCGCGcUCCGU-UGCGA-GCU- -5'
26221 5' -56 NC_005342.2 + 22000 0.67 0.555725
Target:  5'- ---cGUCGGCGCGAauCAGCGCgCGGg -3'
miRNA:   3'- cucaUAGCCGCGCUccGUUGCGaGCU- -5'
26221 5' -56 NC_005342.2 + 22866 0.66 0.599549
Target:  5'- cGGcgAUCGGCGCGAucGUAcugGCGCUCGu -3'
miRNA:   3'- cUCa-UAGCCGCGCUc-CGU---UGCGAGCu -5'
26221 5' -56 NC_005342.2 + 29535 0.67 0.555725
Target:  5'- cGGUGUCGacgccgccgauCGCGAGGCGuuGCGCUuCGGa -3'
miRNA:   3'- cUCAUAGCc----------GCGCUCCGU--UGCGA-GCU- -5'
26221 5' -56 NC_005342.2 + 34118 0.66 0.599549
Target:  5'- -----gCGGCGCGGcGCGcucaauGCGCUCGAc -3'
miRNA:   3'- cucauaGCCGCGCUcCGU------UGCGAGCU- -5'
26221 5' -56 NC_005342.2 + 34226 0.71 0.325539
Target:  5'- cGAG---CGGCGCGcGGCGuccuacGCGCUCGAc -3'
miRNA:   3'- -CUCauaGCCGCGCuCCGU------UGCGAGCU- -5'
26221 5' -56 NC_005342.2 + 36815 0.66 0.610597
Target:  5'- cGAGgacGUCGGgcagcUGCGGGGCGugcucgaaGCGCUCa- -3'
miRNA:   3'- -CUCa--UAGCC-----GCGCUCCGU--------UGCGAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.