miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26222 3' -53.2 NC_005342.2 + 35228 0.66 0.797071
Target:  5'- gUCUGGUAcGAcuACGuGCGCGcgUaccaGCGUa -3'
miRNA:   3'- -AGACCGU-CU--UGCuCGCGCuaAg---UGCA- -5'
26222 3' -53.2 NC_005342.2 + 41425 0.66 0.797071
Target:  5'- uUCgGGCGGcACG-GCGCGAUcaACGa -3'
miRNA:   3'- -AGaCCGUCuUGCuCGCGCUAagUGCa -5'
26222 3' -53.2 NC_005342.2 + 17690 0.66 0.797071
Target:  5'- gCUGGCAG-ACGAuCGCGAaggCGCu- -3'
miRNA:   3'- aGACCGUCuUGCUcGCGCUaa-GUGca -5'
26222 3' -53.2 NC_005342.2 + 47655 0.66 0.787038
Target:  5'- --cGGCGGGgcucuacuACGuGGCuGCGAUUCugGUg -3'
miRNA:   3'- agaCCGUCU--------UGC-UCG-CGCUAAGugCA- -5'
26222 3' -53.2 NC_005342.2 + 30490 0.66 0.776836
Target:  5'- ---aGCAGcgUGAGCGCGGcggccUUCGCGUu -3'
miRNA:   3'- agacCGUCuuGCUCGCGCU-----AAGUGCA- -5'
26222 3' -53.2 NC_005342.2 + 31908 0.66 0.776836
Target:  5'- --aGGUucaGGAcgACGAGCGCGAUgagCACu- -3'
miRNA:   3'- agaCCG---UCU--UGCUCGCGCUAa--GUGca -5'
26222 3' -53.2 NC_005342.2 + 11852 0.66 0.766476
Target:  5'- --cGGCcGAGaCGGGCGCGAgcaccuugucgUCGCGg -3'
miRNA:   3'- agaCCGuCUU-GCUCGCGCUa----------AGUGCa -5'
26222 3' -53.2 NC_005342.2 + 19856 0.66 0.766476
Target:  5'- uUCUGGC---GCGAGUGCGAccgaUUACGc -3'
miRNA:   3'- -AGACCGucuUGCUCGCGCUa---AGUGCa -5'
26222 3' -53.2 NC_005342.2 + 36741 0.67 0.733489
Target:  5'- gUCUGGCAGcacuCGAGCGCcggcaagGAgcCGCGc -3'
miRNA:   3'- -AGACCGUCuu--GCUCGCG-------CUaaGUGCa -5'
26222 3' -53.2 NC_005342.2 + 2302 0.67 0.723702
Target:  5'- aCUGGCGGAacGCGAGCaccguGCGGccgUUGCGc -3'
miRNA:   3'- aGACCGUCU--UGCUCG-----CGCUa--AGUGCa -5'
26222 3' -53.2 NC_005342.2 + 5396 0.69 0.611722
Target:  5'- aCUGGCAGAuGCG-GCGCGGgcUUCuuCGg -3'
miRNA:   3'- aGACCGUCU-UGCuCGCGCU--AAGu-GCa -5'
26222 3' -53.2 NC_005342.2 + 10335 0.7 0.566834
Target:  5'- gUUUGGCGucGCcgaGAGCGCGAaUCGCGa -3'
miRNA:   3'- -AGACCGUcuUG---CUCGCGCUaAGUGCa -5'
26222 3' -53.2 NC_005342.2 + 41344 0.7 0.566834
Target:  5'- cUCUGGCGGcagauuguCGGGCGCGGgcUGCGg -3'
miRNA:   3'- -AGACCGUCuu------GCUCGCGCUaaGUGCa -5'
26222 3' -53.2 NC_005342.2 + 4762 0.7 0.544689
Target:  5'- --cGGCAGggUGAGCccGCGA--CGCGUg -3'
miRNA:   3'- agaCCGUCuuGCUCG--CGCUaaGUGCA- -5'
26222 3' -53.2 NC_005342.2 + 4997 0.72 0.410045
Target:  5'- aCUGGCAGAugcggcGCGGGCauGCGAacgCACGg -3'
miRNA:   3'- aGACCGUCU------UGCUCG--CGCUaa-GUGCa -5'
26222 3' -53.2 NC_005342.2 + 1140 0.74 0.346619
Target:  5'- --cGGCAGcauuuCGAGCGCGAguaggUCGCGg -3'
miRNA:   3'- agaCCGUCuu---GCUCGCGCUa----AGUGCa -5'
26222 3' -53.2 NC_005342.2 + 20194 0.74 0.32167
Target:  5'- --cGGCAGuAAUGGGCGCGGcUCGCGc -3'
miRNA:   3'- agaCCGUC-UUGCUCGCGCUaAGUGCa -5'
26222 3' -53.2 NC_005342.2 + 43062 1.08 0.001635
Target:  5'- aUCUGGCAGAACGAGCGCGAUUCACGUc -3'
miRNA:   3'- -AGACCGUCUUGCUCGCGCUAAGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.