miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26222 5' -54.3 NC_005342.2 + 45403 0.66 0.730255
Target:  5'- cGGGCGCGCGAUCaGCUAccacaacgcacgCCUGCAu -3'
miRNA:   3'- -CUUGCGCGUUAG-CGAUacca--------GGGCGU- -5'
26222 5' -54.3 NC_005342.2 + 27720 0.66 0.729171
Target:  5'- gGAAuUGCGCGAUCGCggcgcgaaucUGGUCggCCGCc -3'
miRNA:   3'- -CUU-GCGCGUUAGCGau--------ACCAG--GGCGu -5'
26222 5' -54.3 NC_005342.2 + 22170 0.66 0.695122
Target:  5'- -uGCGCGCGugauaagAUCGCgcgcAUGaccacgaccaacGUCCCGCAa -3'
miRNA:   3'- cuUGCGCGU-------UAGCGa---UAC------------CAGGGCGU- -5'
26222 5' -54.3 NC_005342.2 + 38992 0.66 0.685106
Target:  5'- -cGCGCGCGAUCGCa--GGUUggCUGCu -3'
miRNA:   3'- cuUGCGCGUUAGCGauaCCAG--GGCGu -5'
26222 5' -54.3 NC_005342.2 + 14833 0.67 0.673926
Target:  5'- cGGCGCGCAGUCGCcg----CgCCGCAg -3'
miRNA:   3'- cUUGCGCGUUAGCGauaccaG-GGCGU- -5'
26222 5' -54.3 NC_005342.2 + 17812 0.67 0.655958
Target:  5'- uGGCGCgagGCAGUCGCUAcggcgcgcgaauucGGUCCgGCGc -3'
miRNA:   3'- cUUGCG---CGUUAGCGAUa-------------CCAGGgCGU- -5'
26222 5' -54.3 NC_005342.2 + 44976 0.67 0.651455
Target:  5'- aAGCGCGCAuggCGCcuUGG-CUCGCGa -3'
miRNA:   3'- cUUGCGCGUua-GCGauACCaGGGCGU- -5'
26222 5' -54.3 NC_005342.2 + 20568 0.67 0.651455
Target:  5'- cGGCGCGUcgGGUCGCgccGUGGUguuUCUGCAg -3'
miRNA:   3'- cUUGCGCG--UUAGCGa--UACCA---GGGCGU- -5'
26222 5' -54.3 NC_005342.2 + 12270 0.67 0.651455
Target:  5'- cGGCGCGC-AUUGCg--GcGUCCUGCGc -3'
miRNA:   3'- cUUGCGCGuUAGCGauaC-CAGGGCGU- -5'
26222 5' -54.3 NC_005342.2 + 38327 0.67 0.617634
Target:  5'- cGGGCGCGC---CGCUgcccGUGGUgCCCGUu -3'
miRNA:   3'- -CUUGCGCGuuaGCGA----UACCA-GGGCGu -5'
26222 5' -54.3 NC_005342.2 + 3246 0.67 0.616507
Target:  5'- cAGCGCGCcgugguaGAUCG-UAUGGUgCUGCAg -3'
miRNA:   3'- cUUGCGCG-------UUAGCgAUACCAgGGCGU- -5'
26222 5' -54.3 NC_005342.2 + 47320 0.68 0.595136
Target:  5'- cGAugGUGCGAaaUCG--GUGGaCCCGCAg -3'
miRNA:   3'- -CUugCGCGUU--AGCgaUACCaGGGCGU- -5'
26222 5' -54.3 NC_005342.2 + 46918 0.68 0.572769
Target:  5'- gGAACGCGCuAUCGCUGgcgaaaucCCCGUg -3'
miRNA:   3'- -CUUGCGCGuUAGCGAUacca----GGGCGu -5'
26222 5' -54.3 NC_005342.2 + 18116 0.69 0.550606
Target:  5'- aGGCGCGCAgggcaucuuccaGUUGCgcgGGUCgCGCAu -3'
miRNA:   3'- cUUGCGCGU------------UAGCGauaCCAGgGCGU- -5'
26222 5' -54.3 NC_005342.2 + 2371 0.69 0.550606
Target:  5'- cGGCGCcgGCGGUCGCc-UGGUCgCCGUAc -3'
miRNA:   3'- cUUGCG--CGUUAGCGauACCAG-GGCGU- -5'
26222 5' -54.3 NC_005342.2 + 40560 0.72 0.386312
Target:  5'- aGGCGCGCGccuucugGUCGCcggcgAUGGUCgCGCGa -3'
miRNA:   3'- cUUGCGCGU-------UAGCGa----UACCAGgGCGU- -5'
26222 5' -54.3 NC_005342.2 + 36161 0.72 0.378103
Target:  5'- gGAGCGCGCcGUCGCgcugAUGG--CCGCGu -3'
miRNA:   3'- -CUUGCGCGuUAGCGa---UACCagGGCGU- -5'
26222 5' -54.3 NC_005342.2 + 36931 0.73 0.302641
Target:  5'- --cCGcCGCGA-CGCUGUGG-CCCGCAc -3'
miRNA:   3'- cuuGC-GCGUUaGCGAUACCaGGGCGU- -5'
26222 5' -54.3 NC_005342.2 + 43097 1.09 0.001032
Target:  5'- gGAACGCGCAAUCGCUAUGGUCCCGCAg -3'
miRNA:   3'- -CUUGCGCGUUAGCGAUACCAGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.