miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26223 3' -61.4 NC_005342.2 + 5018 0.66 0.349897
Target:  5'- aGGCGgCCGGcUGUUggccgacgucggCGCGGCGCUGa- -3'
miRNA:   3'- gUCGUgGGCC-ACGA------------GCGCCGUGACgu -5'
26223 3' -61.4 NC_005342.2 + 38888 0.66 0.341746
Target:  5'- -uGcCGCCC-GUGCU-GCGcGCGCUGCAc -3'
miRNA:   3'- guC-GUGGGcCACGAgCGC-CGUGACGU- -5'
26223 3' -61.4 NC_005342.2 + 30711 0.66 0.333732
Target:  5'- -uGCugCgGGcUGCUCGCacgauagguGCGCUGCAg -3'
miRNA:   3'- guCGugGgCC-ACGAGCGc--------CGUGACGU- -5'
26223 3' -61.4 NC_005342.2 + 13944 0.66 0.333732
Target:  5'- cCGGCGgCCGGUGCgCGCGaGCugAgUGCc -3'
miRNA:   3'- -GUCGUgGGCCACGaGCGC-CG--UgACGu -5'
26223 3' -61.4 NC_005342.2 + 13605 0.66 0.333732
Target:  5'- gAGCACUUcGUGCaucgCGCGGUACUcggGCAg -3'
miRNA:   3'- gUCGUGGGcCACGa---GCGCCGUGA---CGU- -5'
26223 3' -61.4 NC_005342.2 + 45132 0.66 0.333732
Target:  5'- uGGCACUCGGU-UUCgGCGGCGCcgacgGCGc -3'
miRNA:   3'- gUCGUGGGCCAcGAG-CGCCGUGa----CGU- -5'
26223 3' -61.4 NC_005342.2 + 6632 0.66 0.333732
Target:  5'- -cGCGCUCGGcgcGCUCGagcaGGCGC-GCAu -3'
miRNA:   3'- guCGUGGGCCa--CGAGCg---CCGUGaCGU- -5'
26223 3' -61.4 NC_005342.2 + 12260 0.66 0.325858
Target:  5'- aCGGCACCggCGGcGCgcaUUGCGGCGucCUGCGc -3'
miRNA:   3'- -GUCGUGG--GCCaCG---AGCGCCGU--GACGU- -5'
26223 3' -61.4 NC_005342.2 + 3628 0.66 0.321199
Target:  5'- cCAGUACCCGGUGUgcagcucguUCGCGacggucugagccgucGCgucguaGCUGCGg -3'
miRNA:   3'- -GUCGUGGGCCACG---------AGCGC---------------CG------UGACGU- -5'
26223 3' -61.4 NC_005342.2 + 9626 0.67 0.310525
Target:  5'- gGGCACCaCGG-GCa-GCGGCGCgcccgGCu -3'
miRNA:   3'- gUCGUGG-GCCaCGagCGCCGUGa----CGu -5'
26223 3' -61.4 NC_005342.2 + 13487 0.67 0.303066
Target:  5'- uCAGCugguCgCCGuccgacGUGCUCGCGGCGUUGCc -3'
miRNA:   3'- -GUCGu---G-GGC------CACGAGCGCCGUGACGu -5'
26223 3' -61.4 NC_005342.2 + 35097 0.67 0.303066
Target:  5'- -cGCuAUCCGG-GCUCGaC-GCACUGCAg -3'
miRNA:   3'- guCG-UGGGCCaCGAGC-GcCGUGACGU- -5'
26223 3' -61.4 NC_005342.2 + 22800 0.67 0.303066
Target:  5'- -cGUACCaGGUGUUCGUcGCGCUGUc -3'
miRNA:   3'- guCGUGGgCCACGAGCGcCGUGACGu -5'
26223 3' -61.4 NC_005342.2 + 9367 0.67 0.303066
Target:  5'- uCGGCGCCCGGcaucucguUGUccUCGCuGCcCUGCGg -3'
miRNA:   3'- -GUCGUGGGCC--------ACG--AGCGcCGuGACGU- -5'
26223 3' -61.4 NC_005342.2 + 18690 0.67 0.281522
Target:  5'- aGGCAagacguaCCGGUGUUa-CGGCAUUGCGc -3'
miRNA:   3'- gUCGUg------GGCCACGAgcGCCGUGACGU- -5'
26223 3' -61.4 NC_005342.2 + 25871 0.67 0.281522
Target:  5'- gCAGCGCuuGGUGCgcgagCGCcaaGCGCcGCGc -3'
miRNA:   3'- -GUCGUGggCCACGa----GCGc--CGUGaCGU- -5'
26223 3' -61.4 NC_005342.2 + 44128 0.67 0.281522
Target:  5'- aCGGCuuGCCgGGUucGCUUGcCGGCGCgUGCGa -3'
miRNA:   3'- -GUCG--UGGgCCA--CGAGC-GCCGUG-ACGU- -5'
26223 3' -61.4 NC_005342.2 + 18537 0.67 0.274615
Target:  5'- gCGGCaACCCgGGUGCggcaGcCGGCGCgGCGg -3'
miRNA:   3'- -GUCG-UGGG-CCACGag--C-GCCGUGaCGU- -5'
26223 3' -61.4 NC_005342.2 + 44747 0.68 0.26121
Target:  5'- -cGCGCgUGGcGCUgGCGGCGC-GCAg -3'
miRNA:   3'- guCGUGgGCCaCGAgCGCCGUGaCGU- -5'
26223 3' -61.4 NC_005342.2 + 24436 0.68 0.26121
Target:  5'- gCGGCuACCCGaaaggCGCGGUGCUGCAa -3'
miRNA:   3'- -GUCG-UGGGCcacgaGCGCCGUGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.