miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26223 3' -61.4 NC_005342.2 + 44747 0.68 0.26121
Target:  5'- -cGCGCgUGGcGCUgGCGGCGC-GCAg -3'
miRNA:   3'- guCGUGgGCCaCGAgCGCCGUGaCGU- -5'
26223 3' -61.4 NC_005342.2 + 19270 0.68 0.248343
Target:  5'- cCGGCgACCUGGUgcuGCUCGCGaGCAa-GCAc -3'
miRNA:   3'- -GUCG-UGGGCCA---CGAGCGC-CGUgaCGU- -5'
26223 3' -61.4 NC_005342.2 + 28631 0.68 0.248343
Target:  5'- cCGGCGCguacuugccgUCGGUGCgcaGCGGCGCgccgagGCAc -3'
miRNA:   3'- -GUCGUG----------GGCCACGag-CGCCGUGa-----CGU- -5'
26223 3' -61.4 NC_005342.2 + 9057 0.69 0.218464
Target:  5'- -uGCugCCGGUGCa-GCGcGCGCaGCAc -3'
miRNA:   3'- guCGugGGCCACGagCGC-CGUGaCGU- -5'
26223 3' -61.4 NC_005342.2 + 18190 0.69 0.218464
Target:  5'- -uGCGCUCGucGUGCgCGCGGCAUcGCAa -3'
miRNA:   3'- guCGUGGGC--CACGaGCGCCGUGaCGU- -5'
26223 3' -61.4 NC_005342.2 + 29425 0.69 0.202051
Target:  5'- -cGCACCCGGguUGC-CGcCGGCugcgaaggccGCUGCAg -3'
miRNA:   3'- guCGUGGGCC--ACGaGC-GCCG----------UGACGU- -5'
26223 3' -61.4 NC_005342.2 + 35793 0.69 0.202051
Target:  5'- gAGCugGCCC-GUGa-CGCGGCGCUGCGc -3'
miRNA:   3'- gUCG--UGGGcCACgaGCGCCGUGACGU- -5'
26223 3' -61.4 NC_005342.2 + 17621 0.71 0.154882
Target:  5'- -cGCGCCCGGUGC-CGUGGCcgacACguucGCGa -3'
miRNA:   3'- guCGUGGGCCACGaGCGCCG----UGa---CGU- -5'
26223 3' -61.4 NC_005342.2 + 16626 0.71 0.150757
Target:  5'- aCAGCacuucgaccuGCCCGGUGCUgcaccgCGCGGUGCggaaGCAc -3'
miRNA:   3'- -GUCG----------UGGGCCACGA------GCGCCGUGa---CGU- -5'
26223 3' -61.4 NC_005342.2 + 8949 0.71 0.149539
Target:  5'- cCAGC-CCCGGgugagcagccaaccUGCgaUCGCGGCGCgUGCGc -3'
miRNA:   3'- -GUCGuGGGCC--------------ACG--AGCGCCGUG-ACGU- -5'
26223 3' -61.4 NC_005342.2 + 8627 0.72 0.128042
Target:  5'- gCGGCGCCCGGcuUGCUCGUGaCGgUGCc -3'
miRNA:   3'- -GUCGUGGGCC--ACGAGCGCcGUgACGu -5'
26223 3' -61.4 NC_005342.2 + 916 0.72 0.128042
Target:  5'- uGGCgGCUCGGgcucUGCUUGCGGCGCaGCAu -3'
miRNA:   3'- gUCG-UGGGCC----ACGAGCGCCGUGaCGU- -5'
26223 3' -61.4 NC_005342.2 + 32688 0.73 0.10556
Target:  5'- aAGCGCCCGGUGCUgaugcugacCGCGccgccgcaGCACgGCAa -3'
miRNA:   3'- gUCGUGGGCCACGA---------GCGC--------CGUGaCGU- -5'
26223 3' -61.4 NC_005342.2 + 22076 0.74 0.091831
Target:  5'- gCGGCGCuuGGcGCUCGCGcaccaaGCGCUGCu -3'
miRNA:   3'- -GUCGUGggCCaCGAGCGC------CGUGACGu -5'
26223 3' -61.4 NC_005342.2 + 23506 0.75 0.079807
Target:  5'- aCAGCaacaGCCCGGU-CUUGCuGGCGCUGCu -3'
miRNA:   3'- -GUCG----UGGGCCAcGAGCG-CCGUGACGu -5'
26223 3' -61.4 NC_005342.2 + 1307 0.78 0.05052
Target:  5'- uGGCugCgcgcgaugcuucgCGGcGCUCGCGGCGCUGCAg -3'
miRNA:   3'- gUCGugG-------------GCCaCGAGCGCCGUGACGU- -5'
26223 3' -61.4 NC_005342.2 + 43578 1.07 0.000234
Target:  5'- gCAGCACCCGGUGCUCGCGGCACUGCAa -3'
miRNA:   3'- -GUCGUGGGCCACGAGCGCCGUGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.