miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26223 5' -56 NC_005342.2 + 7109 0.66 0.641477
Target:  5'- cCGCACUGCGUGAgCgGAACgGCCu---- -3'
miRNA:   3'- -GCGUGACGCGCU-GgUUUG-CGGugcau -5'
26223 5' -56 NC_005342.2 + 101 0.66 0.641477
Target:  5'- gCGCGgUGCGCGcgcccgguuGCCGccuGCGCCuCGUc -3'
miRNA:   3'- -GCGUgACGCGC---------UGGUu--UGCGGuGCAu -5'
26223 5' -56 NC_005342.2 + 43010 0.66 0.641477
Target:  5'- uGCGCUGCcgcaaggcuCGGCCAuuGCGcCCugGUAc -3'
miRNA:   3'- gCGUGACGc--------GCUGGUu-UGC-GGugCAU- -5'
26223 5' -56 NC_005342.2 + 15327 0.66 0.641477
Target:  5'- gGCGCagacGCGCGcGCUGAACGCCgaaugcuuguaACGUGg -3'
miRNA:   3'- gCGUGa---CGCGC-UGGUUUGCGG-----------UGCAU- -5'
26223 5' -56 NC_005342.2 + 36885 0.66 0.641477
Target:  5'- cCGCA--GCGCGGCgAcACGCCGCu-- -3'
miRNA:   3'- -GCGUgaCGCGCUGgUuUGCGGUGcau -5'
26223 5' -56 NC_005342.2 + 10931 0.66 0.640364
Target:  5'- aGCACcGcCGCGACCGAcuggaacGCGUCGCc-- -3'
miRNA:   3'- gCGUGaC-GCGCUGGUU-------UGCGGUGcau -5'
26223 5' -56 NC_005342.2 + 12375 0.66 0.640364
Target:  5'- gCGCGCcagUGuCGCcgccuucGGCCAAGCGCUggACGUAg -3'
miRNA:   3'- -GCGUG---AC-GCG-------CUGGUUUGCGG--UGCAU- -5'
26223 5' -56 NC_005342.2 + 28765 0.66 0.630345
Target:  5'- aGCACUGCGCcGCCcacgaucGCGCCGa--- -3'
miRNA:   3'- gCGUGACGCGcUGGuu-----UGCGGUgcau -5'
26223 5' -56 NC_005342.2 + 41729 0.66 0.630345
Target:  5'- uGCGCgugaagcGCGCGGCCAAcgaGCGggGCGUGc -3'
miRNA:   3'- gCGUGa------CGCGCUGGUU---UGCggUGCAU- -5'
26223 5' -56 NC_005342.2 + 41363 0.66 0.630345
Target:  5'- gGCGCggGCuGCGGCCGuACGCCGg--- -3'
miRNA:   3'- gCGUGa-CG-CGCUGGUuUGCGGUgcau -5'
26223 5' -56 NC_005342.2 + 45722 0.66 0.630345
Target:  5'- aCGCGCUGCGC--UCAAACaacuaCACGUAc -3'
miRNA:   3'- -GCGUGACGCGcuGGUUUGcg---GUGCAU- -5'
26223 5' -56 NC_005342.2 + 39817 0.66 0.630345
Target:  5'- aCGCGaugGaCGCGGCCGAccuguCGCCACa-- -3'
miRNA:   3'- -GCGUga-C-GCGCUGGUUu----GCGGUGcau -5'
26223 5' -56 NC_005342.2 + 37080 0.66 0.630345
Target:  5'- aCGCACUGuCGuCGGCgCAAgugacugucGCGCCgGCGUu -3'
miRNA:   3'- -GCGUGAC-GC-GCUG-GUU---------UGCGG-UGCAu -5'
26223 5' -56 NC_005342.2 + 4849 0.66 0.630345
Target:  5'- gGCgGCUGCGgGACCAuAGCGauugCGCGUu -3'
miRNA:   3'- gCG-UGACGCgCUGGU-UUGCg---GUGCAu -5'
26223 5' -56 NC_005342.2 + 10869 0.66 0.630345
Target:  5'- aGgACggccGCGCGACgCGGugcACGUCGCGUAg -3'
miRNA:   3'- gCgUGa---CGCGCUG-GUU---UGCGGUGCAU- -5'
26223 5' -56 NC_005342.2 + 28135 0.66 0.619215
Target:  5'- cCGUACUGCGCGccGCCGAG-GCUgacaGCGa- -3'
miRNA:   3'- -GCGUGACGCGC--UGGUUUgCGG----UGCau -5'
26223 5' -56 NC_005342.2 + 15373 0.66 0.619215
Target:  5'- uGCACaa-GCGAaaCAAACGCCGCGa- -3'
miRNA:   3'- gCGUGacgCGCUg-GUUUGCGGUGCau -5'
26223 5' -56 NC_005342.2 + 35669 0.66 0.619215
Target:  5'- cCGCGCgaggcugGCGCG-CaGGACGCCGCa-- -3'
miRNA:   3'- -GCGUGa------CGCGCuGgUUUGCGGUGcau -5'
26223 5' -56 NC_005342.2 + 17621 0.66 0.619215
Target:  5'- cCGCGCUGCugcaCGACCuGGCGUC-CGg- -3'
miRNA:   3'- -GCGUGACGc---GCUGGuUUGCGGuGCau -5'
26223 5' -56 NC_005342.2 + 41333 0.66 0.619215
Target:  5'- gCGCGCcgaGCGCGcuGCCGAGCGCgAuCGa- -3'
miRNA:   3'- -GCGUGa--CGCGC--UGGUUUGCGgU-GCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.