miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26223 5' -56 NC_005342.2 + 43613 1.07 0.000944
Target:  5'- uCGCACUGCGCGACCAAACGCCACGUAg -3'
miRNA:   3'- -GCGUGACGCGCUGGUUUGCGGUGCAU- -5'
26223 5' -56 NC_005342.2 + 26933 0.8 0.084607
Target:  5'- aGCACUGCGCGGCCcuucguCGCC-CGUGa -3'
miRNA:   3'- gCGUGACGCGCUGGuuu---GCGGuGCAU- -5'
26223 5' -56 NC_005342.2 + 29606 0.8 0.089643
Target:  5'- aGCGCUGCGCGAUCGGgccacGCGCgGCGUc -3'
miRNA:   3'- gCGUGACGCGCUGGUU-----UGCGgUGCAu -5'
26223 5' -56 NC_005342.2 + 25873 0.79 0.106508
Target:  5'- aGCGCuuggUGCGCGagcGCCAAGCGCCGCGc- -3'
miRNA:   3'- gCGUG----ACGCGC---UGGUUUGCGGUGCau -5'
26223 5' -56 NC_005342.2 + 10136 0.78 0.112764
Target:  5'- aGC-UUGUGCGACCAGAUGCCGgGUAa -3'
miRNA:   3'- gCGuGACGCGCUGGUUUGCGGUgCAU- -5'
26223 5' -56 NC_005342.2 + 24292 0.78 0.112764
Target:  5'- gGCgACUGCGCGACCugGAACaGCCGCGa- -3'
miRNA:   3'- gCG-UGACGCGCUGG--UUUG-CGGUGCau -5'
26223 5' -56 NC_005342.2 + 35810 0.78 0.11602
Target:  5'- gGCGCUGCGCG-CCA---GCCACGUAc -3'
miRNA:   3'- gCGUGACGCGCuGGUuugCGGUGCAU- -5'
26223 5' -56 NC_005342.2 + 3202 0.75 0.176482
Target:  5'- aGCGuCUGCGCG-CCGccAGCGCCACGc- -3'
miRNA:   3'- gCGU-GACGCGCuGGU--UUGCGGUGCau -5'
26223 5' -56 NC_005342.2 + 41807 0.75 0.191539
Target:  5'- uCGUGCUGCGCGACgAGGCGUguCGCGa- -3'
miRNA:   3'- -GCGUGACGCGCUGgUUUGCG--GUGCau -5'
26223 5' -56 NC_005342.2 + 18321 0.75 0.196804
Target:  5'- gCGCACgGCaaaGCGGCCGagGACGCCGCGc- -3'
miRNA:   3'- -GCGUGaCG---CGCUGGU--UUGCGGUGCau -5'
26223 5' -56 NC_005342.2 + 42665 0.74 0.231098
Target:  5'- aGCGCgaagGCGCGAaagacCCGAACGCCGaGUAa -3'
miRNA:   3'- gCGUGa---CGCGCU-----GGUUUGCGGUgCAU- -5'
26223 5' -56 NC_005342.2 + 38010 0.73 0.237281
Target:  5'- uGCAC-GCGCGACCGugcACGCgGCGa- -3'
miRNA:   3'- gCGUGaCGCGCUGGUu--UGCGgUGCau -5'
26223 5' -56 NC_005342.2 + 35847 0.73 0.237281
Target:  5'- gGC-CUGCGCGACCGgcgcaaccuucAACGCCucguugACGUAg -3'
miRNA:   3'- gCGuGACGCGCUGGU-----------UUGCGG------UGCAU- -5'
26223 5' -56 NC_005342.2 + 2886 0.73 0.250064
Target:  5'- aCGUGCUGCGCGGCCGucguaacCGUCAgCGUGc -3'
miRNA:   3'- -GCGUGACGCGCUGGUuu-----GCGGU-GCAU- -5'
26223 5' -56 NC_005342.2 + 33131 0.73 0.256665
Target:  5'- gGCgACUGCGCG-CCGAACcguaGCCGCGa- -3'
miRNA:   3'- gCG-UGACGCGCuGGUUUG----CGGUGCau -5'
26223 5' -56 NC_005342.2 + 6413 0.73 0.263409
Target:  5'- -cCGCU-CGCGGCCGGGCGCCGuCGUGc -3'
miRNA:   3'- gcGUGAcGCGCUGGUUUGCGGU-GCAU- -5'
26223 5' -56 NC_005342.2 + 3964 0.73 0.263409
Target:  5'- gCGUugUGCGCGACgaaCAGGcCGCCACuGUGa -3'
miRNA:   3'- -GCGugACGCGCUG---GUUU-GCGGUG-CAU- -5'
26223 5' -56 NC_005342.2 + 28694 0.73 0.27309
Target:  5'- aCGCggcaaucaGCUGCGCGGCCGccggaucggcguguGCGUCGCGUGc -3'
miRNA:   3'- -GCG--------UGACGCGCUGGUu-------------UGCGGUGCAU- -5'
26223 5' -56 NC_005342.2 + 35598 0.72 0.277326
Target:  5'- gCGCGCcgggcgggGCGCGGgCGGGCGCUACGg- -3'
miRNA:   3'- -GCGUGa-------CGCGCUgGUUUGCGGUGCau -5'
26223 5' -56 NC_005342.2 + 19350 0.72 0.277326
Target:  5'- uGCGCcgaGCGCGACCGuGCGgCACGa- -3'
miRNA:   3'- gCGUGa--CGCGCUGGUuUGCgGUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.