miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26223 5' -56 NC_005342.2 + 15373 0.66 0.619215
Target:  5'- uGCACaa-GCGAaaCAAACGCCGCGa- -3'
miRNA:   3'- gCGUGacgCGCUg-GUUUGCGGUGCau -5'
26223 5' -56 NC_005342.2 + 44378 0.66 0.608096
Target:  5'- gCGCccgACUGgGCGAauaCGAuCGCCGCGa- -3'
miRNA:   3'- -GCG---UGACgCGCUg--GUUuGCGGUGCau -5'
26223 5' -56 NC_005342.2 + 38894 0.66 0.608096
Target:  5'- cCGUGCUGCGCGcgcugcACCGGcagcACGcCCGCGc- -3'
miRNA:   3'- -GCGUGACGCGC------UGGUU----UGC-GGUGCau -5'
26223 5' -56 NC_005342.2 + 1079 0.66 0.608096
Target:  5'- gCGCACgcugcggcgGCGCG-CCAAAUGCguCGa- -3'
miRNA:   3'- -GCGUGa--------CGCGCuGGUUUGCGguGCau -5'
26223 5' -56 NC_005342.2 + 8666 0.66 0.606985
Target:  5'- aGCACgGCGaacgugcCGACCGuGACGCCGCu-- -3'
miRNA:   3'- gCGUGaCGC-------GCUGGU-UUGCGGUGcau -5'
26223 5' -56 NC_005342.2 + 45378 0.66 0.596998
Target:  5'- gCGCGCUGCGCaugcaccuACCGAGCggGCgCGCGa- -3'
miRNA:   3'- -GCGUGACGCGc-------UGGUUUG--CG-GUGCau -5'
26223 5' -56 NC_005342.2 + 34114 0.66 0.596998
Target:  5'- uCGCGCgGCGCGGCgCGcucaaugcgcucGACGCgGCGc- -3'
miRNA:   3'- -GCGUGaCGCGCUG-GU------------UUGCGgUGCau -5'
26223 5' -56 NC_005342.2 + 27388 0.66 0.596998
Target:  5'- -cCACgGCGCGACCcgacGCGCCgACGa- -3'
miRNA:   3'- gcGUGaCGCGCUGGuu--UGCGG-UGCau -5'
26223 5' -56 NC_005342.2 + 21565 0.66 0.596998
Target:  5'- cCGCGCUGCa--GCCAAGCGCuauCACGa- -3'
miRNA:   3'- -GCGUGACGcgcUGGUUUGCG---GUGCau -5'
26223 5' -56 NC_005342.2 + 11083 0.66 0.585931
Target:  5'- cCGCGCUGCGgGauGCCGcACGUgauCGCGUc -3'
miRNA:   3'- -GCGUGACGCgC--UGGUuUGCG---GUGCAu -5'
26223 5' -56 NC_005342.2 + 10728 0.66 0.585931
Target:  5'- uCGUACcGCGCGGCCcGGCGCaacCGa- -3'
miRNA:   3'- -GCGUGaCGCGCUGGuUUGCGgu-GCau -5'
26223 5' -56 NC_005342.2 + 19718 0.66 0.585931
Target:  5'- gGCGCUGgugGCGugCAAgacgGCGCCGCu-- -3'
miRNA:   3'- gCGUGACg--CGCugGUU----UGCGGUGcau -5'
26223 5' -56 NC_005342.2 + 6315 0.66 0.585931
Target:  5'- cCGCACcGCGCGAUUuuacgauGCGCCG-GUAu -3'
miRNA:   3'- -GCGUGaCGCGCUGGuu-----UGCGGUgCAU- -5'
26223 5' -56 NC_005342.2 + 8939 0.66 0.585931
Target:  5'- uGCGCgggcuggaucGUGCGGCCGuGCGCgGCGg- -3'
miRNA:   3'- gCGUGa---------CGCGCUGGUuUGCGgUGCau -5'
26223 5' -56 NC_005342.2 + 13633 0.67 0.574903
Target:  5'- gGCAgCUGCGCGAgCAGcACGa-GCGUAg -3'
miRNA:   3'- gCGU-GACGCGCUgGUU-UGCggUGCAU- -5'
26223 5' -56 NC_005342.2 + 41383 0.67 0.574903
Target:  5'- gGCGCUGgGCGGCgCGccGugGCgGCGa- -3'
miRNA:   3'- gCGUGACgCGCUG-GU--UugCGgUGCau -5'
26223 5' -56 NC_005342.2 + 33315 0.67 0.574903
Target:  5'- cCGacaaGCUGCGCGAaau-GCGCCGCa-- -3'
miRNA:   3'- -GCg---UGACGCGCUgguuUGCGGUGcau -5'
26223 5' -56 NC_005342.2 + 6881 0.67 0.574903
Target:  5'- gCGguCggGCGCGugCucGAGCGCCACa-- -3'
miRNA:   3'- -GCguGa-CGCGCugG--UUUGCGGUGcau -5'
26223 5' -56 NC_005342.2 + 20213 0.67 0.574903
Target:  5'- aCGgGCUcgGCGgcCGACCAGauucGCGCCGCGa- -3'
miRNA:   3'- -GCgUGA--CGC--GCUGGUU----UGCGGUGCau -5'
26223 5' -56 NC_005342.2 + 14259 0.67 0.573803
Target:  5'- gGCAC-GUGCGACCAGAcaagcgggucacuCGCgACGg- -3'
miRNA:   3'- gCGUGaCGCGCUGGUUU-------------GCGgUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.