miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26224 3' -47.5 NC_005342.2 + 19492 0.66 0.982735
Target:  5'- -----cGGCGCuggcGCGCUGGCGGCgcUCGu -3'
miRNA:   3'- guguaaCUGUGu---UGUGAUUGCCG--AGC- -5'
26224 3' -47.5 NC_005342.2 + 14952 0.66 0.980383
Target:  5'- uGCGgccGACGCAACGCgucgcuCGGCUg- -3'
miRNA:   3'- gUGUaa-CUGUGUUGUGauu---GCCGAgc -5'
26224 3' -47.5 NC_005342.2 + 12927 0.66 0.980383
Target:  5'- ----aUGGCACGaguGCAgUAACGGCggCGg -3'
miRNA:   3'- guguaACUGUGU---UGUgAUUGCCGa-GC- -5'
26224 3' -47.5 NC_005342.2 + 9066 0.66 0.980383
Target:  5'- uGCAgcgcGCGCAGCACgGGCGGCa-- -3'
miRNA:   3'- gUGUaac-UGUGUUGUGaUUGCCGagc -5'
26224 3' -47.5 NC_005342.2 + 5238 0.66 0.9778
Target:  5'- aACG-UGAUGCGAUACgggGGCGuGCUCa -3'
miRNA:   3'- gUGUaACUGUGUUGUGa--UUGC-CGAGc -5'
26224 3' -47.5 NC_005342.2 + 20188 0.66 0.971895
Target:  5'- cUACAUgcUGACGaacguGCGcCUGACGGgCUCGg -3'
miRNA:   3'- -GUGUA--ACUGUgu---UGU-GAUUGCC-GAGC- -5'
26224 3' -47.5 NC_005342.2 + 12253 0.66 0.971895
Target:  5'- aACGU--ACACGGCACcGGCGGCgCGc -3'
miRNA:   3'- gUGUAacUGUGUUGUGaUUGCCGaGC- -5'
26224 3' -47.5 NC_005342.2 + 37406 0.66 0.971895
Target:  5'- -----cGGCcCGGCGCgUGGCGGCUCa -3'
miRNA:   3'- guguaaCUGuGUUGUG-AUUGCCGAGc -5'
26224 3' -47.5 NC_005342.2 + 24920 0.66 0.971895
Target:  5'- cUAUAcgGGCAaccaAACGCUGACGGCa-- -3'
miRNA:   3'- -GUGUaaCUGUg---UUGUGAUUGCCGagc -5'
26224 3' -47.5 NC_005342.2 + 17055 0.67 0.968552
Target:  5'- gGCGUUGucgaGCACGGCGCgccguuugGGCGGCg-- -3'
miRNA:   3'- gUGUAAC----UGUGUUGUGa-------UUGCCGagc -5'
26224 3' -47.5 NC_005342.2 + 42828 0.67 0.968552
Target:  5'- uGCGcUGcucgACAACACgGGCGGCUCGc -3'
miRNA:   3'- gUGUaACug--UGUUGUGaUUGCCGAGC- -5'
26224 3' -47.5 NC_005342.2 + 41259 0.67 0.968552
Target:  5'- --aAUUGAgCACGuuGCACgcAUGGCUCGu -3'
miRNA:   3'- gugUAACU-GUGU--UGUGauUGCCGAGC- -5'
26224 3' -47.5 NC_005342.2 + 903 0.67 0.968552
Target:  5'- gGCGUUuGCGCu---UUGGCGGCUCGg -3'
miRNA:   3'- gUGUAAcUGUGuuguGAUUGCCGAGC- -5'
26224 3' -47.5 NC_005342.2 + 47205 0.67 0.964935
Target:  5'- aCGCAUcGACuaGCAACGCgccGGCGGCg-- -3'
miRNA:   3'- -GUGUAaCUG--UGUUGUGa--UUGCCGagc -5'
26224 3' -47.5 NC_005342.2 + 44293 0.67 0.961036
Target:  5'- cCGCAgc--UACGACGC-GACGGCUCa -3'
miRNA:   3'- -GUGUaacuGUGUUGUGaUUGCCGAGc -5'
26224 3' -47.5 NC_005342.2 + 15139 0.68 0.952361
Target:  5'- uGCAagGGCGCGACG--AAgGGCUCGu -3'
miRNA:   3'- gUGUaaCUGUGUUGUgaUUgCCGAGC- -5'
26224 3' -47.5 NC_005342.2 + 20951 0.68 0.947572
Target:  5'- cCACGgggcgGACGCaAACGCgcGCGGCgCGg -3'
miRNA:   3'- -GUGUaa---CUGUG-UUGUGauUGCCGaGC- -5'
26224 3' -47.5 NC_005342.2 + 11672 0.69 0.925308
Target:  5'- -cCGUcGACGCAGCGCcgGGCGGCg-- -3'
miRNA:   3'- guGUAaCUGUGUUGUGa-UUGCCGagc -5'
26224 3' -47.5 NC_005342.2 + 13788 0.69 0.925308
Target:  5'- gCGCGcgaGGCGCAGCgACggcGACGGUUCGg -3'
miRNA:   3'- -GUGUaa-CUGUGUUG-UGa--UUGCCGAGC- -5'
26224 3' -47.5 NC_005342.2 + 8439 0.69 0.918954
Target:  5'- gCGCGUUcggacGGcCACAGCGCgAGCGGCgUCGg -3'
miRNA:   3'- -GUGUAA-----CU-GUGUUGUGaUUGCCG-AGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.