miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26224 5' -55 NC_005342.2 + 37604 0.66 0.670088
Target:  5'- uUCGGcCUGCUcgcgauucgcGCUCUcgGCGACGCc -3'
miRNA:   3'- uAGCCcGGCGA----------UGAGAaaCGCUGUGu -5'
26224 5' -55 NC_005342.2 + 40899 0.66 0.65884
Target:  5'- cGUCGGGCCGCaACUUUaa-CGACuCGu -3'
miRNA:   3'- -UAGCCCGGCGaUGAGAaacGCUGuGU- -5'
26224 5' -55 NC_005342.2 + 11197 0.66 0.65884
Target:  5'- uUCGGG-CGCgGCUCcUUGcCGGCGCu -3'
miRNA:   3'- uAGCCCgGCGaUGAGaAAC-GCUGUGu -5'
26224 5' -55 NC_005342.2 + 6883 0.66 0.647565
Target:  5'- gGUCGGG-CGCgUGCUCga-GCGcCACAc -3'
miRNA:   3'- -UAGCCCgGCG-AUGAGaaaCGCuGUGU- -5'
26224 5' -55 NC_005342.2 + 3090 0.67 0.602425
Target:  5'- uAUCGGGCCGac-UUCgg-GCGACgACAg -3'
miRNA:   3'- -UAGCCCGGCgauGAGaaaCGCUG-UGU- -5'
26224 5' -55 NC_005342.2 + 20162 0.67 0.602425
Target:  5'- cUC-GGCCGCcgGCUCgg-GCGcACACAa -3'
miRNA:   3'- uAGcCCGGCGa-UGAGaaaCGC-UGUGU- -5'
26224 5' -55 NC_005342.2 + 8535 0.67 0.591182
Target:  5'- -cCGaGGUCGCUugUCgucaGUGGCGCAg -3'
miRNA:   3'- uaGC-CCGGCGAugAGaaa-CGCUGUGU- -5'
26224 5' -55 NC_005342.2 + 32061 0.67 0.591182
Target:  5'- -cCGGGUCGCUGCcCgauagcgUGCGcaGCACGa -3'
miRNA:   3'- uaGCCCGGCGAUGaGaa-----ACGC--UGUGU- -5'
26224 5' -55 NC_005342.2 + 20156 0.68 0.546662
Target:  5'- uUCGuGGUCGaCUACUCg--GCgGACACGa -3'
miRNA:   3'- uAGC-CCGGC-GAUGAGaaaCG-CUGUGU- -5'
26224 5' -55 NC_005342.2 + 44087 0.68 0.546662
Target:  5'- aAUCGgacaGGUgCGCUGCUCg--GCGGCGCGc -3'
miRNA:   3'- -UAGC----CCG-GCGAUGAGaaaCGCUGUGU- -5'
26224 5' -55 NC_005342.2 + 1074 0.68 0.503263
Target:  5'- cAUCGGcGCaCGCUGCg----GCGGCGCGc -3'
miRNA:   3'- -UAGCC-CG-GCGAUGagaaaCGCUGUGU- -5'
26224 5' -55 NC_005342.2 + 41413 0.69 0.492642
Target:  5'- -gCGGGCgGCaACUUcggGCGGCACGg -3'
miRNA:   3'- uaGCCCGgCGaUGAGaaaCGCUGUGU- -5'
26224 5' -55 NC_005342.2 + 14153 0.69 0.461429
Target:  5'- -cCGGGCCGCUcgUCcgggUGCGGCAgCAu -3'
miRNA:   3'- uaGCCCGGCGAugAGaa--ACGCUGU-GU- -5'
26224 5' -55 NC_005342.2 + 922 0.7 0.44121
Target:  5'- cUCGGGCU-CUGCU---UGCGGCGCAg -3'
miRNA:   3'- uAGCCCGGcGAUGAgaaACGCUGUGU- -5'
26224 5' -55 NC_005342.2 + 16500 0.7 0.402336
Target:  5'- cUCGGGCCGCgag-Cg--GUGGCGCAa -3'
miRNA:   3'- uAGCCCGGCGaugaGaaaCGCUGUGU- -5'
26224 5' -55 NC_005342.2 + 7552 0.71 0.374646
Target:  5'- gAUCGGGuuGgUGUUCUUUGCGGuCGCGa -3'
miRNA:   3'- -UAGCCCggCgAUGAGAAACGCU-GUGU- -5'
26224 5' -55 NC_005342.2 + 21983 0.73 0.292021
Target:  5'- -gCGGGCCGUU-UUCUUUGCGucgGCGCGa -3'
miRNA:   3'- uaGCCCGGCGAuGAGAAACGC---UGUGU- -5'
26224 5' -55 NC_005342.2 + 40542 0.73 0.270178
Target:  5'- cGUCGGGCCGuCUcgugcaGCUCUggGCGcCGCGc -3'
miRNA:   3'- -UAGCCCGGC-GA------UGAGAaaCGCuGUGU- -5'
26224 5' -55 NC_005342.2 + 43762 1.07 0.001075
Target:  5'- aAUCGGGCCGCUACUCUUUGCGACACAa -3'
miRNA:   3'- -UAGCCCGGCGAUGAGAAACGCUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.