miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26225 5' -50.2 NC_005342.2 + 2740 0.66 0.93754
Target:  5'- cCGUGCCGGucGCGu-UCGUCAcgaccgugaagcgauUGCGCa -3'
miRNA:   3'- -GCACGGCUu-UGUcuAGCAGU---------------ACGUGg -5'
26225 5' -50.2 NC_005342.2 + 39306 0.66 0.934256
Target:  5'- cCGUGCUGAacgccGACGGcacCGUCAcgagcaagccggGCGCCg -3'
miRNA:   3'- -GCACGGCU-----UUGUCua-GCAGUa-----------CGUGG- -5'
26225 5' -50.2 NC_005342.2 + 3248 0.66 0.929711
Target:  5'- gCGcGCCGugGUAGAUCGUaugGUGCugCa -3'
miRNA:   3'- -GCaCGGCuuUGUCUAGCAg--UACGugG- -5'
26225 5' -50.2 NC_005342.2 + 30970 0.66 0.929711
Target:  5'- --cGCCGucuCGGuguUCGUCAgugcaaGCACCa -3'
miRNA:   3'- gcaCGGCuuuGUCu--AGCAGUa-----CGUGG- -5'
26225 5' -50.2 NC_005342.2 + 46039 0.66 0.927957
Target:  5'- --cGUCGAAgaucgacugaacgaGCGGGcgcCGUUAUGCGCCg -3'
miRNA:   3'- gcaCGGCUU--------------UGUCUa--GCAGUACGUGG- -5'
26225 5' -50.2 NC_005342.2 + 498 0.66 0.923761
Target:  5'- aCGUGCCGGcgAGCGuGAacgcuUCGUCGUacuuCGCCu -3'
miRNA:   3'- -GCACGGCU--UUGU-CU-----AGCAGUAc---GUGG- -5'
26225 5' -50.2 NC_005342.2 + 7181 0.66 0.921917
Target:  5'- aCGUGCgGAuuGGCGGcgCGaaacgugucgacgaUCGUGCGCg -3'
miRNA:   3'- -GCACGgCU--UUGUCuaGC--------------AGUACGUGg -5'
26225 5' -50.2 NC_005342.2 + 39378 0.66 0.917513
Target:  5'- uCGUGCaucgCGAAAugaaugcuCAGAUCGUCGcGUAUCu -3'
miRNA:   3'- -GCACG----GCUUU--------GUCUAGCAGUaCGUGG- -5'
26225 5' -50.2 NC_005342.2 + 25029 0.66 0.917513
Target:  5'- --cGCCGGAAuCGGGuaguUCGUC--GCGCCg -3'
miRNA:   3'- gcaCGGCUUU-GUCU----AGCAGuaCGUGG- -5'
26225 5' -50.2 NC_005342.2 + 27826 0.66 0.917513
Target:  5'- --aGCCGGcguGCAGAUCGcuuUCA-GCACg -3'
miRNA:   3'- gcaCGGCUu--UGUCUAGC---AGUaCGUGg -5'
26225 5' -50.2 NC_005342.2 + 15452 0.66 0.917513
Target:  5'- gCGUGCCGAgcgcAACAGGgcugcUCG-CGgcgGuCACCg -3'
miRNA:   3'- -GCACGGCU----UUGUCU-----AGCaGUa--C-GUGG- -5'
26225 5' -50.2 NC_005342.2 + 44326 0.66 0.916871
Target:  5'- cCGUGCCGcugccgccgcgcGAGCAGG-CGUauuucgaaauggaCAUGCGCa -3'
miRNA:   3'- -GCACGGC------------UUUGUCUaGCA-------------GUACGUGg -5'
26225 5' -50.2 NC_005342.2 + 699 0.66 0.910967
Target:  5'- cCGUGgCGAGGuuGAUUGcCGuUGCGCCc -3'
miRNA:   3'- -GCACgGCUUUguCUAGCaGU-ACGUGG- -5'
26225 5' -50.2 NC_005342.2 + 4294 0.66 0.910967
Target:  5'- aCGUGCau--ACGGuAUCGcCGUGCGCa -3'
miRNA:   3'- -GCACGgcuuUGUC-UAGCaGUACGUGg -5'
26225 5' -50.2 NC_005342.2 + 19867 0.66 0.910967
Target:  5'- gCGUGCCGcucgacacgauGAAcCAGAUCG-CGcGCAUCu -3'
miRNA:   3'- -GCACGGC-----------UUU-GUCUAGCaGUaCGUGG- -5'
26225 5' -50.2 NC_005342.2 + 3669 0.66 0.910967
Target:  5'- uCGcGUCGuagcuGCGGAUCGUCugguugaGCGCCu -3'
miRNA:   3'- -GCaCGGCuu---UGUCUAGCAGua-----CGUGG- -5'
26225 5' -50.2 NC_005342.2 + 659 0.67 0.904126
Target:  5'- cCGUGCUcGGugAGcgCGaUCGUGcCGCCg -3'
miRNA:   3'- -GCACGGcUUugUCuaGC-AGUAC-GUGG- -5'
26225 5' -50.2 NC_005342.2 + 9601 0.67 0.904126
Target:  5'- cCGUGCCGcc-CGGGcCGaUCAgaacggGCACCa -3'
miRNA:   3'- -GCACGGCuuuGUCUaGC-AGUa-----CGUGG- -5'
26225 5' -50.2 NC_005342.2 + 24489 0.67 0.904126
Target:  5'- gCG-GCCGAGAUAG-UCGgUCAUuucaGCAUCa -3'
miRNA:   3'- -GCaCGGCUUUGUCuAGC-AGUA----CGUGG- -5'
26225 5' -50.2 NC_005342.2 + 24190 0.67 0.896993
Target:  5'- uCGUGCCGuucgcGCAGAacgacUCGUCGcgugucgagcUGC-CCg -3'
miRNA:   3'- -GCACGGCuu---UGUCU-----AGCAGU----------ACGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.