miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26225 5' -50.2 NC_005342.2 + 17001 0.67 0.896264
Target:  5'- uCGUGCaCGcuGCAGGccaauggCGUCAUGCucgcgguguuccaGCCg -3'
miRNA:   3'- -GCACG-GCuuUGUCUa------GCAGUACG-------------UGG- -5'
26225 5' -50.2 NC_005342.2 + 4155 0.67 0.889573
Target:  5'- uCGUGCUGcAGCGGcgUGUgCuucUGCGCCu -3'
miRNA:   3'- -GCACGGCuUUGUCuaGCA-Gu--ACGUGG- -5'
26225 5' -50.2 NC_005342.2 + 5855 0.67 0.889573
Target:  5'- gGUGCCGcugcccauGCAG-UUGUCcaGCACCg -3'
miRNA:   3'- gCACGGCuu------UGUCuAGCAGuaCGUGG- -5'
26225 5' -50.2 NC_005342.2 + 42014 0.67 0.881869
Target:  5'- gGUGCCGAccgaGGCGuAUCG-CGUGCugUu -3'
miRNA:   3'- gCACGGCU----UUGUcUAGCaGUACGugG- -5'
26225 5' -50.2 NC_005342.2 + 32021 0.67 0.873889
Target:  5'- aCGUGCgucAGCAGGUCGgucacgagcgCGUGCACg -3'
miRNA:   3'- -GCACGgcuUUGUCUAGCa---------GUACGUGg -5'
26225 5' -50.2 NC_005342.2 + 9941 0.68 0.865639
Target:  5'- gGUcGCCGcguGCAcGGUCGcgCGUGCAUCg -3'
miRNA:   3'- gCA-CGGCuu-UGU-CUAGCa-GUACGUGG- -5'
26225 5' -50.2 NC_005342.2 + 38258 0.68 0.857126
Target:  5'- uGUcGCCGAcGCGGcguuUCGcgaaccgCGUGCGCCg -3'
miRNA:   3'- gCA-CGGCUuUGUCu---AGCa------GUACGUGG- -5'
26225 5' -50.2 NC_005342.2 + 8532 0.68 0.857126
Target:  5'- -uUGCCGAGgucGCuuGUCGUCAgugGCGCa -3'
miRNA:   3'- gcACGGCUU---UGucUAGCAGUa--CGUGg -5'
26225 5' -50.2 NC_005342.2 + 3001 0.68 0.857126
Target:  5'- uCGaUGCCG-GACAGGUCG----GCACCg -3'
miRNA:   3'- -GC-ACGGCuUUGUCUAGCaguaCGUGG- -5'
26225 5' -50.2 NC_005342.2 + 39381 0.68 0.857126
Target:  5'- gGUcGCCGAGGCGGcgcgcuuccugGUCGgccugCcUGCGCCa -3'
miRNA:   3'- gCA-CGGCUUUGUC-----------UAGCa----GuACGUGG- -5'
26225 5' -50.2 NC_005342.2 + 31114 0.68 0.84836
Target:  5'- cCGUGCCGAA-CAGucgccCGUCGauCGCCu -3'
miRNA:   3'- -GCACGGCUUuGUCua---GCAGUacGUGG- -5'
26225 5' -50.2 NC_005342.2 + 38058 0.68 0.842982
Target:  5'- uGUGCCGAccgaagccgAACuGAUCGacgcgcugucgcgugUCGggUGCGCCg -3'
miRNA:   3'- gCACGGCU---------UUGuCUAGC---------------AGU--ACGUGG- -5'
26225 5' -50.2 NC_005342.2 + 10570 0.68 0.830102
Target:  5'- cCG-GCCGAcgAGCGGGUCGggCGcGCGCUc -3'
miRNA:   3'- -GCaCGGCU--UUGUCUAGCa-GUaCGUGG- -5'
26225 5' -50.2 NC_005342.2 + 42863 0.68 0.830102
Target:  5'- -uUGUCGGGAUcguguccgGGAUCGUCAcGCACa -3'
miRNA:   3'- gcACGGCUUUG--------UCUAGCAGUaCGUGg -5'
26225 5' -50.2 NC_005342.2 + 34645 0.68 0.830102
Target:  5'- cCGUGCCGAAA-GGGUCGUuccaaggucugCGUGUcguugaGCCg -3'
miRNA:   3'- -GCACGGCUUUgUCUAGCA-----------GUACG------UGG- -5'
26225 5' -50.2 NC_005342.2 + 8936 0.69 0.820631
Target:  5'- gCGUGCgCGGGcUGGAUCGUgcggcCGUGCGCg -3'
miRNA:   3'- -GCACG-GCUUuGUCUAGCA-----GUACGUGg -5'
26225 5' -50.2 NC_005342.2 + 15289 0.69 0.810946
Target:  5'- -uUGCCGucGAGCAGGUCGUCgAUGaACUu -3'
miRNA:   3'- gcACGGC--UUUGUCUAGCAG-UACgUGG- -5'
26225 5' -50.2 NC_005342.2 + 35646 0.69 0.810946
Target:  5'- --gGCCGAAGuCAG-UCGUCAUgaGCGCg -3'
miRNA:   3'- gcaCGGCUUU-GUCuAGCAGUA--CGUGg -5'
26225 5' -50.2 NC_005342.2 + 38443 0.69 0.801058
Target:  5'- cCGcGCUGAAGCAGcUCGUCGaGCAa- -3'
miRNA:   3'- -GCaCGGCUUUGUCuAGCAGUaCGUgg -5'
26225 5' -50.2 NC_005342.2 + 4074 0.69 0.790979
Target:  5'- -uUGCCGAgcgggcgcGACAGGUCGUCGaaUuuGCCg -3'
miRNA:   3'- gcACGGCU--------UUGUCUAGCAGU--AcgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.