miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26226 3' -57.1 NC_005342.2 + 41430 0.66 0.596889
Target:  5'- gCGGCACGGCgcgAUCAacgaggaGAUCgGCgCGg -3'
miRNA:   3'- aGUCGUGCCGa--UGGUg------CUAGaCGgGC- -5'
26226 3' -57.1 NC_005342.2 + 47053 0.66 0.575058
Target:  5'- aUAGCGCGGCgcacGCUACGAgggcgcaaUGCCg- -3'
miRNA:   3'- aGUCGUGCCGa---UGGUGCUag------ACGGgc -5'
26226 3' -57.1 NC_005342.2 + 34321 0.66 0.575058
Target:  5'- --cGCuCGuGCUGCuCGCGcagCUGCCCGa -3'
miRNA:   3'- aguCGuGC-CGAUG-GUGCua-GACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 11200 0.66 0.575058
Target:  5'- -gGGCGCGGCUccuuGCCGgcgcuCGAgugCUGCCa- -3'
miRNA:   3'- agUCGUGCCGA----UGGU-----GCUa--GACGGgc -5'
26226 3' -57.1 NC_005342.2 + 13871 0.66 0.575058
Target:  5'- cCGGCACgGGCUGCgcggcggccguCGCGAUCguaGCCg- -3'
miRNA:   3'- aGUCGUG-CCGAUG-----------GUGCUAGa--CGGgc -5'
26226 3' -57.1 NC_005342.2 + 645 0.66 0.571799
Target:  5'- -aGGCACGGUagUGCCcgugcucggugagcGCGAUCgugccgccGCCCGc -3'
miRNA:   3'- agUCGUGCCG--AUGG--------------UGCUAGa-------CGGGC- -5'
26226 3' -57.1 NC_005342.2 + 8663 0.66 0.564209
Target:  5'- uUCAGCACGGCgaacgugccgACCGUGAcgCcGCUCGa -3'
miRNA:   3'- -AGUCGUGCCGa---------UGGUGCUa-GaCGGGC- -5'
26226 3' -57.1 NC_005342.2 + 27449 0.66 0.564209
Target:  5'- aCGGCGCGGCggcgGCCggcaGCGGU-UGCgCGg -3'
miRNA:   3'- aGUCGUGCCGa---UGG----UGCUAgACGgGC- -5'
26226 3' -57.1 NC_005342.2 + 37442 0.67 0.521435
Target:  5'- gUCGGCAa-GCUGCCGCGGg-UGCgCGa -3'
miRNA:   3'- -AGUCGUgcCGAUGGUGCUagACGgGC- -5'
26226 3' -57.1 NC_005342.2 + 9526 0.67 0.520381
Target:  5'- uUCAGCGCGGC-ACCaaucgugGCGAguucgUUGCCg- -3'
miRNA:   3'- -AGUCGUGCCGaUGG-------UGCUa----GACGGgc -5'
26226 3' -57.1 NC_005342.2 + 5762 0.67 0.500518
Target:  5'- aUCAGCGCGGCUAuuuucgguggUCAUGGUgUGgUCCu -3'
miRNA:   3'- -AGUCGUGCCGAU----------GGUGCUAgAC-GGGc -5'
26226 3' -57.1 NC_005342.2 + 38849 0.67 0.494315
Target:  5'- aCGGCAuCGGCuUGCCGaucacCGAUCUcgacgacauccugccGCCCGu -3'
miRNA:   3'- aGUCGU-GCCG-AUGGU-----GCUAGA---------------CGGGC- -5'
26226 3' -57.1 NC_005342.2 + 22187 0.67 0.490199
Target:  5'- gCGGCGguuCGGCgGCUGCGGcCUGCUCGa -3'
miRNA:   3'- aGUCGU---GCCGaUGGUGCUaGACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 19737 0.67 0.490199
Target:  5'- aCGGCGCcGCUGCCgucaacgacGCGAUCgGCCg- -3'
miRNA:   3'- aGUCGUGcCGAUGG---------UGCUAGaCGGgc -5'
26226 3' -57.1 NC_005342.2 + 402 0.67 0.490199
Target:  5'- gCGGCGC-GCUG-CACGAUCaGCCUGc -3'
miRNA:   3'- aGUCGUGcCGAUgGUGCUAGaCGGGC- -5'
26226 3' -57.1 NC_005342.2 + 30687 0.67 0.484055
Target:  5'- -aGGCGCGacuccauaaagcccuGCUGCUGCGggCUGCUCGc -3'
miRNA:   3'- agUCGUGC---------------CGAUGGUGCuaGACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 14790 0.68 0.469866
Target:  5'- cCGGCGCGccGCUGCCAaug-CUGCCgGa -3'
miRNA:   3'- aGUCGUGC--CGAUGGUgcuaGACGGgC- -5'
26226 3' -57.1 NC_005342.2 + 44702 0.68 0.469866
Target:  5'- gCAGCACcauacgauCUACCACGGcgcgCUGUCCGg -3'
miRNA:   3'- aGUCGUGcc------GAUGGUGCUa---GACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 44839 0.68 0.468861
Target:  5'- gUCuGCGCGGCgAUCGCGccuaccuGUCgucGCCCGa -3'
miRNA:   3'- -AGuCGUGCCGaUGGUGC-------UAGa--CGGGC- -5'
26226 3' -57.1 NC_005342.2 + 24227 0.68 0.459862
Target:  5'- aCGGCGCuugcccccagGGCUuCCACGGUgUGCCg- -3'
miRNA:   3'- aGUCGUG----------CCGAuGGUGCUAgACGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.