miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26226 3' -57.1 NC_005342.2 + 44053 1.09 0.0005
Target:  5'- gUCAGCACGGCUACCACGAUCUGCCCGa -3'
miRNA:   3'- -AGUCGUGCCGAUGGUGCUAGACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 32051 0.81 0.059748
Target:  5'- --uGCACGGCUGCCGgGucgCUGCCCGa -3'
miRNA:   3'- aguCGUGCCGAUGGUgCua-GACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 16855 0.77 0.118621
Target:  5'- uUCGGCACGGCcgacUGCC-UGAUCuggUGCCCGg -3'
miRNA:   3'- -AGUCGUGCCG----AUGGuGCUAG---ACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 9561 0.74 0.199768
Target:  5'- uUCAGCGCGGCgGCCAg---CUGCUCGa -3'
miRNA:   3'- -AGUCGUGCCGaUGGUgcuaGACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 10193 0.73 0.222107
Target:  5'- gUCGGCAUcaaaGCUGCgCGCGGUCUGCuuGu -3'
miRNA:   3'- -AGUCGUGc---CGAUG-GUGCUAGACGggC- -5'
26226 3' -57.1 NC_005342.2 + 24566 0.73 0.228015
Target:  5'- cCAGUACGGCgugACCGCc--CUGUCCGg -3'
miRNA:   3'- aGUCGUGCCGa--UGGUGcuaGACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 25119 0.72 0.251684
Target:  5'- -gAGCACGGCggcgcgcacguUCGCGGcCUGCCCGa -3'
miRNA:   3'- agUCGUGCCGau---------GGUGCUaGACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 45230 0.71 0.280159
Target:  5'- cCGGCACGGCgGCCGCaAUCUcGgCCGu -3'
miRNA:   3'- aGUCGUGCCGaUGGUGcUAGA-CgGGC- -5'
26226 3' -57.1 NC_005342.2 + 20471 0.71 0.285147
Target:  5'- gCAGCcgguuagcgucccgGCGGCUGCCGCGcaaccgCUGCCgGc -3'
miRNA:   3'- aGUCG--------------UGCCGAUGGUGCua----GACGGgC- -5'
26226 3' -57.1 NC_005342.2 + 17402 0.71 0.290204
Target:  5'- aCAGCGCGGCcACgACGcgCUgacgaucaaaacgucGCCCGg -3'
miRNA:   3'- aGUCGUGCCGaUGgUGCuaGA---------------CGGGC- -5'
26226 3' -57.1 NC_005342.2 + 21855 0.71 0.309604
Target:  5'- gCGG-GCGGCUACCcCGAagucgcCUGCCCGa -3'
miRNA:   3'- aGUCgUGCCGAUGGuGCUa-----GACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 30829 0.71 0.317324
Target:  5'- gCGGCGCGaGCUGCUgcucGCGcgCgaGCCCGg -3'
miRNA:   3'- aGUCGUGC-CGAUGG----UGCuaGa-CGGGC- -5'
26226 3' -57.1 NC_005342.2 + 128 0.7 0.333196
Target:  5'- uUCGGCGCGaGCa--CACGAUCggcGCCUGg -3'
miRNA:   3'- -AGUCGUGC-CGaugGUGCUAGa--CGGGC- -5'
26226 3' -57.1 NC_005342.2 + 43131 0.7 0.333196
Target:  5'- aUCGGCACGGCgcgcGCgUACGGUCaGCCg- -3'
miRNA:   3'- -AGUCGUGCCGa---UG-GUGCUAGaCGGgc -5'
26226 3' -57.1 NC_005342.2 + 30349 0.7 0.341348
Target:  5'- gCAGCGCGGCaaggcGCgGCGugcgCUGCUCGa -3'
miRNA:   3'- aGUCGUGCCGa----UGgUGCua--GACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 8621 0.7 0.349643
Target:  5'- cUCGGCGCGGC-GCC-CGGcUUGCUCGu -3'
miRNA:   3'- -AGUCGUGCCGaUGGuGCUaGACGGGC- -5'
26226 3' -57.1 NC_005342.2 + 30924 0.7 0.364071
Target:  5'- cCGGCGCGGCUggaaACCGCGAgcaugacgccauugGCCUGc -3'
miRNA:   3'- aGUCGUGCCGA----UGGUGCUaga-----------CGGGC- -5'
26226 3' -57.1 NC_005342.2 + 13721 0.69 0.375379
Target:  5'- cCAGCACGGUUGaCGCGGUaUUGCgCGg -3'
miRNA:   3'- aGUCGUGCCGAUgGUGCUA-GACGgGC- -5'
26226 3' -57.1 NC_005342.2 + 20117 0.69 0.375379
Target:  5'- cUCAGCgACGuGCUGaaaGCGAUCUGCacgCCGg -3'
miRNA:   3'- -AGUCG-UGC-CGAUgg-UGCUAGACG---GGC- -5'
26226 3' -57.1 NC_005342.2 + 4945 0.69 0.384238
Target:  5'- aUCGGCACGaGCgcauagccgGCCGgGAUCggcGCCCc -3'
miRNA:   3'- -AGUCGUGC-CGa--------UGGUgCUAGa--CGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.