miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26226 5' -61.1 NC_005342.2 + 39534 0.66 0.37848
Target:  5'- uGUgGGACGuGGUG-GCcggGCagaucaacgUCGGCGGCa -3'
miRNA:   3'- -UAgCCUGU-CCACgCGa--CG---------AGCCGCCG- -5'
26226 5' -61.1 NC_005342.2 + 2261 0.66 0.37848
Target:  5'- cGUCGG-CAGGUcGUGC-GCcgUGGcCGGCa -3'
miRNA:   3'- -UAGCCuGUCCA-CGCGaCGa-GCC-GCCG- -5'
26226 5' -61.1 NC_005342.2 + 22174 0.66 0.37848
Target:  5'- -cCGGcgGCAGccgGCgGCgGUUCGGCGGCu -3'
miRNA:   3'- uaGCC--UGUCca-CG-CGaCGAGCCGCCG- -5'
26226 5' -61.1 NC_005342.2 + 35603 0.66 0.37848
Target:  5'- -cCGGGCGGG-GCGCggGCgggCGcuaCGGCg -3'
miRNA:   3'- uaGCCUGUCCaCGCGa-CGa--GCc--GCCG- -5'
26226 5' -61.1 NC_005342.2 + 44662 0.66 0.36988
Target:  5'- aGUCGG-CAGcuauccUGCGCgcGCacgUCGGCGGCc -3'
miRNA:   3'- -UAGCCuGUCc-----ACGCGa-CG---AGCCGCCG- -5'
26226 5' -61.1 NC_005342.2 + 24356 0.66 0.36988
Target:  5'- gGUCGcGCGcaucgcuuGGUG-GaugaUGCUCGGCGGCg -3'
miRNA:   3'- -UAGCcUGU--------CCACgCg---ACGAGCCGCCG- -5'
26226 5' -61.1 NC_005342.2 + 47579 0.66 0.369027
Target:  5'- -gCGGACggcgcuucuuuggAGGUGaGCaugugGCUCGGCGcGCu -3'
miRNA:   3'- uaGCCUG-------------UCCACgCGa----CGAGCCGC-CG- -5'
26226 5' -61.1 NC_005342.2 + 8942 0.66 0.353084
Target:  5'- -gCGGGCuGGaucgUGCgGCcgUGCgCGGCGGCg -3'
miRNA:   3'- uaGCCUGuCC----ACG-CG--ACGaGCCGCCG- -5'
26226 5' -61.1 NC_005342.2 + 22823 0.66 0.344079
Target:  5'- uAUCGGGCAGGccgcgaacgUGCGCgccgccgUGCUCGcCGuGCc -3'
miRNA:   3'- -UAGCCUGUCC---------ACGCG-------ACGAGCcGC-CG- -5'
26226 5' -61.1 NC_005342.2 + 18805 0.66 0.336835
Target:  5'- -gCGGccGCAGGgcgcGUGCUGCUaucgaagccCGcGCGGCa -3'
miRNA:   3'- uaGCC--UGUCCa---CGCGACGA---------GC-CGCCG- -5'
26226 5' -61.1 NC_005342.2 + 13733 0.66 0.336835
Target:  5'- --aGGACGccgcGCGCcGCUCGcGCGGCg -3'
miRNA:   3'- uagCCUGUcca-CGCGaCGAGC-CGCCG- -5'
26226 5' -61.1 NC_005342.2 + 33545 0.66 0.336036
Target:  5'- -gCGGACgAGcGUGUGUgGCUgaucgacUGGCGGCg -3'
miRNA:   3'- uaGCCUG-UC-CACGCGaCGA-------GCCGCCG- -5'
26226 5' -61.1 NC_005342.2 + 13675 0.67 0.328917
Target:  5'- -aCGG-CAGGaUGCGCgGCgauugUGGuCGGCa -3'
miRNA:   3'- uaGCCuGUCC-ACGCGaCGa----GCC-GCCG- -5'
26226 5' -61.1 NC_005342.2 + 37502 0.67 0.328917
Target:  5'- -cCGuuCAGGUaguaGCGaaugucCUGCUUGGCGGCg -3'
miRNA:   3'- uaGCcuGUCCA----CGC------GACGAGCCGCCG- -5'
26226 5' -61.1 NC_005342.2 + 18537 0.67 0.321137
Target:  5'- -gCGGcaaccCGGGUGCgGCagccgGCgCGGCGGCg -3'
miRNA:   3'- uaGCCu----GUCCACG-CGa----CGaGCCGCCG- -5'
26226 5' -61.1 NC_005342.2 + 31992 0.67 0.313496
Target:  5'- -cCGGAUg---GCGCgGgUCGGCGGCg -3'
miRNA:   3'- uaGCCUGuccaCGCGaCgAGCCGCCG- -5'
26226 5' -61.1 NC_005342.2 + 47670 0.67 0.313496
Target:  5'- -aCGuGGCugcgauucuGGUGCuauucggcaaGCUGCUCGGCGcGCu -3'
miRNA:   3'- uaGC-CUGu--------CCACG----------CGACGAGCCGC-CG- -5'
26226 5' -61.1 NC_005342.2 + 1162 0.67 0.313496
Target:  5'- --aGGucGCGGGUGCGCUuCUCGuagcCGGCg -3'
miRNA:   3'- uagCC--UGUCCACGCGAcGAGCc---GCCG- -5'
26226 5' -61.1 NC_005342.2 + 30360 0.67 0.305994
Target:  5'- --aGGcGCGGcGUGCGCUGCUCGaGCa-- -3'
miRNA:   3'- uagCC-UGUC-CACGCGACGAGC-CGccg -5'
26226 5' -61.1 NC_005342.2 + 38556 0.67 0.305994
Target:  5'- -cCGGACGGcGUGCGCagcccGCagGGCaGCg -3'
miRNA:   3'- uaGCCUGUC-CACGCGa----CGagCCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.