miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26227 5' -60.9 NC_005342.2 + 19468 0.66 0.38053
Target:  5'- -cCGCCGCGacccGCGCggucgacgCGGCGcucGGGCAg -3'
miRNA:   3'- auGCGGCGC----UGCGa-------GCCGCu--CCUGUa -5'
26227 5' -60.9 NC_005342.2 + 44976 0.66 0.379658
Target:  5'- cUACGUCGCGgcggacGCGC-CGGCGAGcgucuacGGCAUu -3'
miRNA:   3'- -AUGCGGCGC------UGCGaGCCGCUC-------CUGUA- -5'
26227 5' -60.9 NC_005342.2 + 2254 0.66 0.371874
Target:  5'- gGCGCCGaGugGCa-GGCcGGGACAc -3'
miRNA:   3'- aUGCGGCgCugCGagCCGcUCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 7673 0.66 0.371874
Target:  5'- gGCGUCGUaGCGgugaUCGGCGcGGACAg -3'
miRNA:   3'- aUGCGGCGcUGCg---AGCCGCuCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 15635 0.66 0.371016
Target:  5'- --aGCCGCG-CGCgaauacgCGGCGcgcaaacGGGACAa -3'
miRNA:   3'- augCGGCGCuGCGa------GCCGC-------UCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 47769 0.66 0.363354
Target:  5'- uUGC-CCGCG-CGCUCuGGCGuguuGGGCGc -3'
miRNA:   3'- -AUGcGGCGCuGCGAG-CCGCu---CCUGUa -5'
26227 5' -60.9 NC_005342.2 + 37156 0.66 0.354969
Target:  5'- cUGCGgCGUGACGaaCGGCGccGACAUu -3'
miRNA:   3'- -AUGCgGCGCUGCgaGCCGCucCUGUA- -5'
26227 5' -60.9 NC_005342.2 + 2621 0.66 0.346722
Target:  5'- cGCGCuCGcCGGCGUaUCGGCGGcGACAc -3'
miRNA:   3'- aUGCG-GC-GCUGCG-AGCCGCUcCUGUa -5'
26227 5' -60.9 NC_005342.2 + 36281 0.66 0.346722
Target:  5'- cACGCCGCccGGCGCUgCGuCGAcGGAUAUg -3'
miRNA:   3'- aUGCGGCG--CUGCGA-GCcGCU-CCUGUA- -5'
26227 5' -60.9 NC_005342.2 + 2963 0.66 0.346722
Target:  5'- aAUGCCGUaGACGCUCgccGGCGcguccgccGGACGUa -3'
miRNA:   3'- aUGCGGCG-CUGCGAG---CCGCu-------CCUGUA- -5'
26227 5' -60.9 NC_005342.2 + 10843 0.66 0.338613
Target:  5'- gACGCCGCGcgggaagaACGC-CGGCGc-GACAg -3'
miRNA:   3'- aUGCGGCGC--------UGCGaGCCGCucCUGUa -5'
26227 5' -60.9 NC_005342.2 + 46072 0.67 0.330643
Target:  5'- aUGCGCCGCuGCGgaUUUGGCGcggccuAGGACAg -3'
miRNA:   3'- -AUGCGGCGcUGC--GAGCCGC------UCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 490 0.67 0.322811
Target:  5'- gGCG-CGCGACGUgcCGGCGAGcGugAa -3'
miRNA:   3'- aUGCgGCGCUGCGa-GCCGCUC-CugUa -5'
26227 5' -60.9 NC_005342.2 + 38640 0.67 0.322811
Target:  5'- cGCGCCGaCGACGaacacgaaagCGcCGAGGACAa -3'
miRNA:   3'- aUGCGGC-GCUGCga--------GCcGCUCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 16931 0.67 0.322811
Target:  5'- gGCGCCGU---GCUCGGCGucGGCGc -3'
miRNA:   3'- aUGCGGCGcugCGAGCCGCucCUGUa -5'
26227 5' -60.9 NC_005342.2 + 11034 0.67 0.318179
Target:  5'- aGCGUCGCGGCGgaaCUCGGCaccggcgcgcgucguGAGcGGCGUg -3'
miRNA:   3'- aUGCGGCGCUGC---GAGCCG---------------CUC-CUGUA- -5'
26227 5' -60.9 NC_005342.2 + 17697 0.67 0.315119
Target:  5'- gACGaUCGCGaagGCGCUCGaGUGGGGAUg- -3'
miRNA:   3'- aUGC-GGCGC---UGCGAGC-CGCUCCUGua -5'
26227 5' -60.9 NC_005342.2 + 47143 0.67 0.315119
Target:  5'- cGCGCCgaGCGACGCgcaGGCGAccGCAg -3'
miRNA:   3'- aUGCGG--CGCUGCGag-CCGCUccUGUa -5'
26227 5' -60.9 NC_005342.2 + 28604 0.67 0.315119
Target:  5'- -gUGCCGCacggucGCGCUCGGCGcAGGcCGg -3'
miRNA:   3'- auGCGGCGc-----UGCGAGCCGC-UCCuGUa -5'
26227 5' -60.9 NC_005342.2 + 5262 0.67 0.314358
Target:  5'- aGCGCCGCc-CGCUcguccgcCGGCGAGGGu-- -3'
miRNA:   3'- aUGCGGCGcuGCGA-------GCCGCUCCUgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.