miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26227 5' -60.9 NC_005342.2 + 19501 0.67 0.307567
Target:  5'- cGCGCUgGCGGCGCUCguGGcCGuauGGGCAa -3'
miRNA:   3'- aUGCGG-CGCUGCGAG--CC-GCu--CCUGUa -5'
26227 5' -60.9 NC_005342.2 + 20967 0.67 0.300153
Target:  5'- aACGCgCGCGGCGCg-GGCGAGuGGg-- -3'
miRNA:   3'- aUGCG-GCGCUGCGagCCGCUC-CUgua -5'
26227 5' -60.9 NC_005342.2 + 8020 0.67 0.292878
Target:  5'- -uCGCCGaCGA-GCUCGGCGgccuucaucGGGGCGa -3'
miRNA:   3'- auGCGGC-GCUgCGAGCCGC---------UCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 41383 0.68 0.278743
Target:  5'- gGCGCUggGCGGCGCgccguggCGGCGAugcGGGCu- -3'
miRNA:   3'- aUGCGG--CGCUGCGa------GCCGCU---CCUGua -5'
26227 5' -60.9 NC_005342.2 + 40567 0.68 0.271882
Target:  5'- gGCGCCGCG-CGUcgaaGGCaAGGACAc -3'
miRNA:   3'- aUGCGGCGCuGCGag--CCGcUCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 8217 0.68 0.265157
Target:  5'- cGCGCCGUGGCGC-CGcGCGAGuucCGUg -3'
miRNA:   3'- aUGCGGCGCUGCGaGC-CGCUCcu-GUA- -5'
26227 5' -60.9 NC_005342.2 + 17915 0.68 0.252112
Target:  5'- gUGCgGCCGCG-CGCcUGGCGGGuGGCGUc -3'
miRNA:   3'- -AUG-CGGCGCuGCGaGCCGCUC-CUGUA- -5'
26227 5' -60.9 NC_005342.2 + 11923 0.68 0.252112
Target:  5'- gGCGauGCGACGCcCGGCGAcuacucGGGCGg -3'
miRNA:   3'- aUGCggCGCUGCGaGCCGCU------CCUGUa -5'
26227 5' -60.9 NC_005342.2 + 43885 0.69 0.233541
Target:  5'- -cUGUCGCGccCGCUCGGCaAGGGCGg -3'
miRNA:   3'- auGCGGCGCu-GCGAGCCGcUCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 38055 0.69 0.233541
Target:  5'- cUGCGCgGCGACcuGCUCGuGUG-GGACGg -3'
miRNA:   3'- -AUGCGgCGCUG--CGAGC-CGCuCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 41243 0.69 0.216135
Target:  5'- gGCGCCGUGGCGCUCGaauUGAGcACGUu -3'
miRNA:   3'- aUGCGGCGCUGCGAGCc--GCUCcUGUA- -5'
26227 5' -60.9 NC_005342.2 + 17175 0.7 0.210584
Target:  5'- gGCGCuCGCGuCGUUCGGCGugaacauucagcAGGAUGUg -3'
miRNA:   3'- aUGCG-GCGCuGCGAGCCGC------------UCCUGUA- -5'
26227 5' -60.9 NC_005342.2 + 11984 0.7 0.194665
Target:  5'- -uCGCUGCaugucGugGCUCGGCGAGGuCu- -3'
miRNA:   3'- auGCGGCG-----CugCGAGCCGCUCCuGua -5'
26227 5' -60.9 NC_005342.2 + 30856 0.7 0.194665
Target:  5'- aUGCGCUGC--UGCUCGGCGGuGACGUg -3'
miRNA:   3'- -AUGCGGCGcuGCGAGCCGCUcCUGUA- -5'
26227 5' -60.9 NC_005342.2 + 13801 0.71 0.175084
Target:  5'- aGCGaCgGCGACgGUUCGGCGAcGGGCGc -3'
miRNA:   3'- aUGC-GgCGCUG-CGAGCCGCU-CCUGUa -5'
26227 5' -60.9 NC_005342.2 + 23877 0.71 0.161569
Target:  5'- aUGCGCU-CGAUGUUCGGCGAucgGGGCAa -3'
miRNA:   3'- -AUGCGGcGCUGCGAGCCGCU---CCUGUa -5'
26227 5' -60.9 NC_005342.2 + 44525 1.04 0.000478
Target:  5'- aUACGCCGCGACGCUCGGCGAGGACAUg -3'
miRNA:   3'- -AUGCGGCGCUGCGAGCCGCUCCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.