miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26227 5' -60.9 NC_005342.2 + 44525 1.04 0.000478
Target:  5'- aUACGCCGCGACGCUCGGCGAGGACAUg -3'
miRNA:   3'- -AUGCGGCGCUGCGAGCCGCUCCUGUA- -5'
26227 5' -60.9 NC_005342.2 + 37156 0.66 0.354969
Target:  5'- cUGCGgCGUGACGaaCGGCGccGACAUu -3'
miRNA:   3'- -AUGCgGCGCUGCgaGCCGCucCUGUA- -5'
26227 5' -60.9 NC_005342.2 + 10843 0.66 0.338613
Target:  5'- gACGCCGCGcgggaagaACGC-CGGCGc-GACAg -3'
miRNA:   3'- aUGCGGCGC--------UGCGaGCCGCucCUGUa -5'
26227 5' -60.9 NC_005342.2 + 46072 0.67 0.330643
Target:  5'- aUGCGCCGCuGCGgaUUUGGCGcggccuAGGACAg -3'
miRNA:   3'- -AUGCGGCGcUGC--GAGCCGC------UCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 28604 0.67 0.315119
Target:  5'- -gUGCCGCacggucGCGCUCGGCGcAGGcCGg -3'
miRNA:   3'- auGCGGCGc-----UGCGAGCCGC-UCCuGUa -5'
26227 5' -60.9 NC_005342.2 + 19501 0.67 0.307567
Target:  5'- cGCGCUgGCGGCGCUCguGGcCGuauGGGCAa -3'
miRNA:   3'- aUGCGG-CGCUGCGAG--CC-GCu--CCUGUa -5'
26227 5' -60.9 NC_005342.2 + 7673 0.66 0.371874
Target:  5'- gGCGUCGUaGCGgugaUCGGCGcGGACAg -3'
miRNA:   3'- aUGCGGCGcUGCg---AGCCGCuCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 2963 0.66 0.346722
Target:  5'- aAUGCCGUaGACGCUCgccGGCGcguccgccGGACGUa -3'
miRNA:   3'- aUGCGGCG-CUGCGAG---CCGCu-------CCUGUA- -5'
26227 5' -60.9 NC_005342.2 + 47143 0.67 0.315119
Target:  5'- cGCGCCgaGCGACGCgcaGGCGAccGCAg -3'
miRNA:   3'- aUGCGG--CGCUGCGag-CCGCUccUGUa -5'
26227 5' -60.9 NC_005342.2 + 20967 0.67 0.300153
Target:  5'- aACGCgCGCGGCGCg-GGCGAGuGGg-- -3'
miRNA:   3'- aUGCG-GCGCUGCGagCCGCUC-CUgua -5'
26227 5' -60.9 NC_005342.2 + 13801 0.71 0.175084
Target:  5'- aGCGaCgGCGACgGUUCGGCGAcGGGCGc -3'
miRNA:   3'- aUGC-GgCGCUG-CGAGCCGCU-CCUGUa -5'
26227 5' -60.9 NC_005342.2 + 8020 0.67 0.292878
Target:  5'- -uCGCCGaCGA-GCUCGGCGgccuucaucGGGGCGa -3'
miRNA:   3'- auGCGGC-GCUgCGAGCCGC---------UCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 2621 0.66 0.346722
Target:  5'- cGCGCuCGcCGGCGUaUCGGCGGcGACAc -3'
miRNA:   3'- aUGCG-GC-GCUGCG-AGCCGCUcCUGUa -5'
26227 5' -60.9 NC_005342.2 + 47769 0.66 0.363354
Target:  5'- uUGC-CCGCG-CGCUCuGGCGuguuGGGCGc -3'
miRNA:   3'- -AUGcGGCGCuGCGAG-CCGCu---CCUGUa -5'
26227 5' -60.9 NC_005342.2 + 17915 0.68 0.252112
Target:  5'- gUGCgGCCGCG-CGCcUGGCGGGuGGCGUc -3'
miRNA:   3'- -AUG-CGGCGCuGCGaGCCGCUC-CUGUA- -5'
26227 5' -60.9 NC_005342.2 + 8217 0.68 0.265157
Target:  5'- cGCGCCGUGGCGC-CGcGCGAGuucCGUg -3'
miRNA:   3'- aUGCGGCGCUGCGaGC-CGCUCcu-GUA- -5'
26227 5' -60.9 NC_005342.2 + 40567 0.68 0.271882
Target:  5'- gGCGCCGCG-CGUcgaaGGCaAGGACAc -3'
miRNA:   3'- aUGCGGCGCuGCGag--CCGcUCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 41383 0.68 0.278743
Target:  5'- gGCGCUggGCGGCGCgccguggCGGCGAugcGGGCu- -3'
miRNA:   3'- aUGCGG--CGCUGCGa------GCCGCU---CCUGua -5'
26227 5' -60.9 NC_005342.2 + 2254 0.66 0.371874
Target:  5'- gGCGCCGaGugGCa-GGCcGGGACAc -3'
miRNA:   3'- aUGCGGCgCugCGagCCGcUCCUGUa -5'
26227 5' -60.9 NC_005342.2 + 490 0.67 0.322811
Target:  5'- gGCG-CGCGACGUgcCGGCGAGcGugAa -3'
miRNA:   3'- aUGCgGCGCUGCGa-GCCGCUC-CugUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.