Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26228 | 3' | -52.7 | NC_005342.2 | + | 41545 | 0.66 | 0.824872 |
Target: 5'- cGUGGaCAUgguaaUGUGCGAUUUGCCguACGGCa -3' miRNA: 3'- aCGUC-GUG-----GUAUGCUAGAUGG--UGCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 25772 | 0.66 | 0.824872 |
Target: 5'- cGCAGCcgccgaaccGCCGc-CGG-CUGCCGcCGGCg -3' miRNA: 3'- aCGUCG---------UGGUauGCUaGAUGGU-GCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 16882 | 0.66 | 0.824872 |
Target: 5'- cGCGGCugCGUcgcucggcaGCGGUCUgaugaaGCUggcCGGCa -3' miRNA: 3'- aCGUCGugGUA---------UGCUAGA------UGGu--GCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 36538 | 0.66 | 0.824872 |
Target: 5'- cGCAGgaaUACCAcacaGCGGUCgaaggcgacgUGCUGCGGCa -3' miRNA: 3'- aCGUC---GUGGUa---UGCUAG----------AUGGUGCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 23740 | 0.66 | 0.824872 |
Target: 5'- gGCaAGCGCCGUuuuACGG-CgGCCagGCGGCc -3' miRNA: 3'- aCG-UCGUGGUA---UGCUaGaUGG--UGCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 6819 | 0.66 | 0.824872 |
Target: 5'- aGCAGCGCCuguuCGAUCaugugCGCGuGCu -3' miRNA: 3'- aCGUCGUGGuau-GCUAGaug--GUGC-CG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 415 | 0.66 | 0.824872 |
Target: 5'- gGCAGUGCgGaACGcaAUCU-UCACGGCg -3' miRNA: 3'- aCGUCGUGgUaUGC--UAGAuGGUGCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 28664 | 0.66 | 0.823929 |
Target: 5'- cGCcgaGGCACgCGUuguucacGCGGUCgaaCGCGGCa -3' miRNA: 3'- aCG---UCGUG-GUA-------UGCUAGaugGUGCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 3523 | 0.66 | 0.822036 |
Target: 5'- aGCuGCGCCucgGCGAacgccuucaaguccUCcaucGCCugGGCg -3' miRNA: 3'- aCGuCGUGGua-UGCU--------------AGa---UGGugCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 14118 | 0.66 | 0.815344 |
Target: 5'- aGCAGUaACgGUuucACGAUCaaUGCgACGGCc -3' miRNA: 3'- aCGUCG-UGgUA---UGCUAG--AUGgUGCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 41429 | 0.66 | 0.815344 |
Target: 5'- gGCGGCACgGcGCGAUCaACgAggagauCGGCg -3' miRNA: 3'- aCGUCGUGgUaUGCUAGaUGgU------GCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 44046 | 0.66 | 0.815344 |
Target: 5'- cUGCGGCGUCAgcACGG-CUACCACGa- -3' miRNA: 3'- -ACGUCGUGGUa-UGCUaGAUGGUGCcg -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 30139 | 0.66 | 0.815344 |
Target: 5'- cGC-GCGCCGUaGCGA-CUGCCuCGcGCc -3' miRNA: 3'- aCGuCGUGGUA-UGCUaGAUGGuGC-CG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 18536 | 0.66 | 0.815344 |
Target: 5'- gGCGGCaACCcggGUGCGG-CaGCCggcGCGGCg -3' miRNA: 3'- aCGUCG-UGG---UAUGCUaGaUGG---UGCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 34235 | 0.66 | 0.815344 |
Target: 5'- cGCGGCGuCC-UACGcgCUcgACUucaACGGCa -3' miRNA: 3'- aCGUCGU-GGuAUGCuaGA--UGG---UGCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 10082 | 0.66 | 0.815344 |
Target: 5'- aGCGGCguGCCAa--GAUCggcgGCCGgguCGGCg -3' miRNA: 3'- aCGUCG--UGGUaugCUAGa---UGGU---GCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 12260 | 0.66 | 0.805612 |
Target: 5'- -aCGGCACCGgcgGCGcgC-AUUGCGGCg -3' miRNA: 3'- acGUCGUGGUa--UGCuaGaUGGUGCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 34720 | 0.66 | 0.805612 |
Target: 5'- cUGCcGUACCAUugcCGGUCgcgccgaacACCAuCGGCg -3' miRNA: 3'- -ACGuCGUGGUAu--GCUAGa--------UGGU-GCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 11904 | 0.66 | 0.805612 |
Target: 5'- cGCGcGCGCCAUuacGCGcgCU-CCA-GGCg -3' miRNA: 3'- aCGU-CGUGGUA---UGCuaGAuGGUgCCG- -5' |
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26228 | 3' | -52.7 | NC_005342.2 | + | 16624 | 0.66 | 0.805612 |
Target: 5'- cGaCAGCACUu--CGAcCUGCC-CGGUg -3' miRNA: 3'- aC-GUCGUGGuauGCUaGAUGGuGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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