miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26228 5' -64.1 NC_005342.2 + 34024 0.66 0.292388
Target:  5'- cCGGCCGCcggcccgaagUCGccaaggcgGCCGCGU-UGGcCGCUGc -3'
miRNA:   3'- -GCCGGCG----------AGC--------UGGCGCGcACC-GCGAC- -5'
26228 5' -64.1 NC_005342.2 + 33732 0.66 0.292388
Target:  5'- -cGCCGCUCGGCUcgaaagagGCGCGc-GCGCa- -3'
miRNA:   3'- gcCGGCGAGCUGG--------CGCGCacCGCGac -5'
26228 5' -64.1 NC_005342.2 + 22831 0.66 0.292388
Target:  5'- aGGCCGCgaaCGugCGCGcCGccGUGCUc -3'
miRNA:   3'- gCCGGCGa--GCugGCGC-GCacCGCGAc -5'
26228 5' -64.1 NC_005342.2 + 11029 0.66 0.292388
Target:  5'- gGGUCGaauuCUCGACCGC-CG-GGCGUg- -3'
miRNA:   3'- gCCGGC----GAGCUGGCGcGCaCCGCGac -5'
26228 5' -64.1 NC_005342.2 + 41456 0.66 0.285498
Target:  5'- uCGGCgCGggCGACuCGCGCGccgGGCuaUGg -3'
miRNA:   3'- -GCCG-GCgaGCUG-GCGCGCa--CCGcgAC- -5'
26228 5' -64.1 NC_005342.2 + 29441 0.66 0.285498
Target:  5'- cCGGCUGCgaaGGCCGCugcaGCGUccgucGGCGUg- -3'
miRNA:   3'- -GCCGGCGag-CUGGCG----CGCA-----CCGCGac -5'
26228 5' -64.1 NC_005342.2 + 29544 0.66 0.285498
Target:  5'- -cGCCGC-CGAUCGCGa--GGCGUUGc -3'
miRNA:   3'- gcCGGCGaGCUGGCGCgcaCCGCGAC- -5'
26228 5' -64.1 NC_005342.2 + 42950 0.66 0.285498
Target:  5'- cCGGCCGCcUGGCCGCcUGUcaaGCGCg- -3'
miRNA:   3'- -GCCGGCGaGCUGGCGcGCAc--CGCGac -5'
26228 5' -64.1 NC_005342.2 + 28908 0.66 0.278735
Target:  5'- gGGUCGCUgCGcgcacCCGCGCaUGGCGUc- -3'
miRNA:   3'- gCCGGCGA-GCu----GGCGCGcACCGCGac -5'
26228 5' -64.1 NC_005342.2 + 44138 0.66 0.272102
Target:  5'- gGGuUCGCUUGcCgGCGCGUgcgaGGCGCUu -3'
miRNA:   3'- gCC-GGCGAGCuGgCGCGCA----CCGCGAc -5'
26228 5' -64.1 NC_005342.2 + 42004 0.66 0.272102
Target:  5'- cCGGCCGCaaggugcCGACCGagGCGUaucGcGUGCUGu -3'
miRNA:   3'- -GCCGGCGa------GCUGGCg-CGCA---C-CGCGAC- -5'
26228 5' -64.1 NC_005342.2 + 37784 0.66 0.272102
Target:  5'- aCGGCCGCa----UGCGCGUGcGCGaCUGc -3'
miRNA:   3'- -GCCGGCGagcugGCGCGCAC-CGC-GAC- -5'
26228 5' -64.1 NC_005342.2 + 6637 0.66 0.261116
Target:  5'- uCGGCgCGCUCGagcaggcgcgcauccGCCGCuucacguGCGgGGCGCa- -3'
miRNA:   3'- -GCCG-GCGAGC---------------UGGCG-------CGCaCCGCGac -5'
26228 5' -64.1 NC_005342.2 + 9474 0.66 0.259216
Target:  5'- uCGGCaaGCUCGgcgauGCCGCuCGUGGcCGCUu -3'
miRNA:   3'- -GCCGg-CGAGC-----UGGCGcGCACC-GCGAc -5'
26228 5' -64.1 NC_005342.2 + 6798 0.66 0.259216
Target:  5'- aCGGCCGaCUCGcCCGCGuCGagcaGCGcCUGu -3'
miRNA:   3'- -GCCGGC-GAGCuGGCGC-GCac--CGC-GAC- -5'
26228 5' -64.1 NC_005342.2 + 40546 0.67 0.254825
Target:  5'- gGGCCGuCUCGugcagcucugggcGCCGCGCGUcgaaggcaaggacacGGCGacCUGc -3'
miRNA:   3'- gCCGGC-GAGC-------------UGGCGCGCA---------------CCGC--GAC- -5'
26228 5' -64.1 NC_005342.2 + 28021 0.67 0.252962
Target:  5'- aCGGCgGCUCG-CCGCcCG-GcGCGCUc -3'
miRNA:   3'- -GCCGgCGAGCuGGCGcGCaC-CGCGAc -5'
26228 5' -64.1 NC_005342.2 + 9640 0.67 0.252962
Target:  5'- gCGGCgCGCcCGGCUGUaGC-UGGCGCUu -3'
miRNA:   3'- -GCCG-GCGaGCUGGCG-CGcACCGCGAc -5'
26228 5' -64.1 NC_005342.2 + 45287 0.67 0.252962
Target:  5'- uCGGCCugUCGGCCGC-CGccGGCGCg- -3'
miRNA:   3'- -GCCGGcgAGCUGGCGcGCa-CCGCGac -5'
26228 5' -64.1 NC_005342.2 + 819 0.67 0.25111
Target:  5'- gCGcGUCGCUCGG-CGCGgGUGuuucgacgacuggcGCGCUGg -3'
miRNA:   3'- -GC-CGGCGAGCUgGCGCgCAC--------------CGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.