miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26228 5' -64.1 NC_005342.2 + 37429 0.67 0.246226
Target:  5'- uGGCCuGCUCGaugucggcaagcuGCCGCGgGUG-CGCg- -3'
miRNA:   3'- gCCGG-CGAGC-------------UGGCGCgCACcGCGac -5'
26228 5' -64.1 NC_005342.2 + 15469 0.67 0.240826
Target:  5'- gGGCUGCUCGcggcggucaccgGCgGCGCGUcaaGCGCg- -3'
miRNA:   3'- gCCGGCGAGC------------UGgCGCGCAc--CGCGac -5'
26228 5' -64.1 NC_005342.2 + 21664 0.67 0.240826
Target:  5'- cCGGCuuuCGCaUCGACgGCGCGgUGcGCGCc- -3'
miRNA:   3'- -GCCG---GCG-AGCUGgCGCGC-AC-CGCGac -5'
26228 5' -64.1 NC_005342.2 + 2895 0.67 0.240826
Target:  5'- gCGGCCG-UCGuaACCGUcaGCGUGcCGCUGu -3'
miRNA:   3'- -GCCGGCgAGC--UGGCG--CGCACcGCGAC- -5'
26228 5' -64.1 NC_005342.2 + 28711 0.67 0.22918
Target:  5'- gCGGCCGCcggaUCGGCgUGUGCGUcGCGUg- -3'
miRNA:   3'- -GCCGGCG----AGCUG-GCGCGCAcCGCGac -5'
26228 5' -64.1 NC_005342.2 + 45238 0.67 0.22918
Target:  5'- gCGGCCGCaaucUCGGCCGUGaCG-GGCa--- -3'
miRNA:   3'- -GCCGGCG----AGCUGGCGC-GCaCCGcgac -5'
26228 5' -64.1 NC_005342.2 + 5546 0.67 0.228611
Target:  5'- -cGCCGCccgcucgUCGGCCG-GCGUggagacgaucGGCGCUGu -3'
miRNA:   3'- gcCGGCG-------AGCUGGCgCGCA----------CCGCGAC- -5'
26228 5' -64.1 NC_005342.2 + 47754 0.67 0.226909
Target:  5'- uCGGCgcguucugGCUUGcCCGCGCGcucuggcguguugGGCGCUGg -3'
miRNA:   3'- -GCCGg-------CGAGCuGGCGCGCa------------CCGCGAC- -5'
26228 5' -64.1 NC_005342.2 + 34083 0.67 0.22578
Target:  5'- aCGGCCGCcgcgcagcccgugcCGGCCGacuuCGCGcGGCGCg- -3'
miRNA:   3'- -GCCGGCGa-------------GCUGGC----GCGCaCCGCGac -5'
26228 5' -64.1 NC_005342.2 + 36149 0.67 0.223538
Target:  5'- cCGGCgcaaGCUgGAgCGCGcCGUcGCGCUGa -3'
miRNA:   3'- -GCCGg---CGAgCUgGCGC-GCAcCGCGAC- -5'
26228 5' -64.1 NC_005342.2 + 9604 0.68 0.218014
Target:  5'- cCGGCUGC-CGGCgGCGCGccuGCGCc- -3'
miRNA:   3'- -GCCGGCGaGCUGgCGCGCac-CGCGac -5'
26228 5' -64.1 NC_005342.2 + 19277 0.68 0.213142
Target:  5'- -uGCCGCguUCGACCGCGUGaacaacgcgugccucGGCGCg- -3'
miRNA:   3'- gcCGGCG--AGCUGGCGCGCa--------------CCGCGac -5'
26228 5' -64.1 NC_005342.2 + 9129 0.68 0.212607
Target:  5'- -uGCCuGCUCGACCGCaGC-UGcGCGCUu -3'
miRNA:   3'- gcCGG-CGAGCUGGCG-CGcAC-CGCGAc -5'
26228 5' -64.1 NC_005342.2 + 18282 0.68 0.209418
Target:  5'- gCGGCCGCgcUCGGCaCGCGCuucucgcgcauuuucGaGGCGCa- -3'
miRNA:   3'- -GCCGGCG--AGCUG-GCGCG---------------CaCCGCGac -5'
26228 5' -64.1 NC_005342.2 + 25587 0.68 0.207316
Target:  5'- aCGGCCaucCUCGG-CGCGUGcGGCGCa- -3'
miRNA:   3'- -GCCGGc--GAGCUgGCGCGCaCCGCGac -5'
26228 5' -64.1 NC_005342.2 + 9340 0.68 0.207316
Target:  5'- uGGCCGUgcCGAUCaGCGCGaagcGGCGCg- -3'
miRNA:   3'- gCCGGCGa-GCUGG-CGCGCa---CCGCGac -5'
26228 5' -64.1 NC_005342.2 + 38937 0.68 0.205231
Target:  5'- uCGGCCgagcugcgugcaauGCUCGACCGCaccccgaGCGgccggcaGGCGCa- -3'
miRNA:   3'- -GCCGG--------------CGAGCUGGCG-------CGCa------CCGCGac -5'
26228 5' -64.1 NC_005342.2 + 29638 0.68 0.202139
Target:  5'- uCGGCCGCUUuGCCGUGCGccucgaaaauGCGCg- -3'
miRNA:   3'- -GCCGGCGAGcUGGCGCGCac--------CGCGac -5'
26228 5' -64.1 NC_005342.2 + 41319 0.68 0.202139
Target:  5'- gCGcGCCuGCUCGAgCGCGCcgaGcGCGCUGc -3'
miRNA:   3'- -GC-CGG-CGAGCUgGCGCGca-C-CGCGAC- -5'
26228 5' -64.1 NC_005342.2 + 15493 0.68 0.202139
Target:  5'- cCGGCgGCagCGACCuGCGCGUGaCGUUc -3'
miRNA:   3'- -GCCGgCGa-GCUGG-CGCGCACcGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.