miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26229 3' -53.7 NC_005342.2 + 42694 0.66 0.76807
Target:  5'- -------cCGGCGGACgaGCG-GGCGGc -3'
miRNA:   3'- guucuuuuGCCGCCUGa-CGCuCCGCU- -5'
26229 3' -53.7 NC_005342.2 + 9358 0.66 0.757639
Target:  5'- ---cGAAGCGGCGcGGgUGCGcggacGGGCGGc -3'
miRNA:   3'- guucUUUUGCCGC-CUgACGC-----UCCGCU- -5'
26229 3' -53.7 NC_005342.2 + 6796 0.67 0.714697
Target:  5'- -----cAACGGCGGcACUccgGCGGGGCa- -3'
miRNA:   3'- guucuuUUGCCGCC-UGA---CGCUCCGcu -5'
26229 3' -53.7 NC_005342.2 + 45657 0.67 0.692667
Target:  5'- gCGAGAAGcagcucguCGaGCGGAUgugucgcgGCGAGGCGu -3'
miRNA:   3'- -GUUCUUUu-------GC-CGCCUGa-------CGCUCCGCu -5'
26229 3' -53.7 NC_005342.2 + 20185 0.67 0.691558
Target:  5'- aCAAGAAGGCGGCaguaauGGGC-GCGGcucgcgcuuucguGGCGGc -3'
miRNA:   3'- -GUUCUUUUGCCG------CCUGaCGCU-------------CCGCU- -5'
26229 3' -53.7 NC_005342.2 + 44982 0.68 0.636728
Target:  5'- ------cGCGGCGGAC-GCGccGGCGAg -3'
miRNA:   3'- guucuuuUGCCGCCUGaCGCu-CCGCU- -5'
26229 3' -53.7 NC_005342.2 + 35581 0.68 0.614244
Target:  5'- --cGAAGGCGGCGacacuGGCgcgccggGCGGGGCGc -3'
miRNA:   3'- guuCUUUUGCCGC-----CUGa------CGCUCCGCu -5'
26229 3' -53.7 NC_005342.2 + 13862 0.68 0.614244
Target:  5'- --cGAAGuCGGCcggcacGGGCUGCGcGGCGGc -3'
miRNA:   3'- guuCUUUuGCCG------CCUGACGCuCCGCU- -5'
26229 3' -53.7 NC_005342.2 + 44871 0.69 0.603022
Target:  5'- uCGAGAAcugguuCGGCGcGCUGUcgaacGAGGCGAa -3'
miRNA:   3'- -GUUCUUuu----GCCGCcUGACG-----CUCCGCU- -5'
26229 3' -53.7 NC_005342.2 + 19608 0.71 0.472806
Target:  5'- aCAAGGucACGGCGaGCgcgGCGAGcGCGGc -3'
miRNA:   3'- -GUUCUuuUGCCGCcUGa--CGCUC-CGCU- -5'
26229 3' -53.7 NC_005342.2 + 36815 0.72 0.422734
Target:  5'- --cGAGGACGuCGGgcaGCUGCGGGGCGu -3'
miRNA:   3'- guuCUUUUGCcGCC---UGACGCUCCGCu -5'
26229 3' -53.7 NC_005342.2 + 44800 1.09 0.001292
Target:  5'- gCAAGAAAACGGCGGACUGCGAGGCGAu -3'
miRNA:   3'- -GUUCUUUUGCCGCCUGACGCUCCGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.