miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26229 5' -59.4 NC_005342.2 + 17014 0.66 0.463118
Target:  5'- ----cGCGCGGCcGUCGCGaCCggcaugACCa -3'
miRNA:   3'- acagaCGCGCCGcUAGCGC-GGa-----UGGa -5'
26229 5' -59.4 NC_005342.2 + 26936 0.66 0.453314
Target:  5'- --aCUGCGCGGCccuUCGuCGCCcgugacggcUGCCa -3'
miRNA:   3'- acaGACGCGCCGcu-AGC-GCGG---------AUGGa -5'
26229 5' -59.4 NC_005342.2 + 25544 0.66 0.45234
Target:  5'- aUGUCaGCGggucgacauUGGCGAUCagcugcgcaaacaGCGCUUGCCa -3'
miRNA:   3'- -ACAGaCGC---------GCCGCUAG-------------CGCGGAUGGa -5'
26229 5' -59.4 NC_005342.2 + 30839 0.66 0.450395
Target:  5'- cUG-CUGCucGCGcGCGAgcccggcgaacgcgUCGcCGCCUGCCUu -3'
miRNA:   3'- -ACaGACG--CGC-CGCU--------------AGC-GCGGAUGGA- -5'
26229 5' -59.4 NC_005342.2 + 36623 0.66 0.443624
Target:  5'- cGUCgaGCGCGGCaaGGUgacgacgaacCGCGCC-GCCUu -3'
miRNA:   3'- aCAGa-CGCGCCG--CUA----------GCGCGGaUGGA- -5'
26229 5' -59.4 NC_005342.2 + 47282 0.66 0.443624
Target:  5'- -cUCgcggGCgGCGGCacGAUCGCGCUcACCg -3'
miRNA:   3'- acAGa---CG-CGCCG--CUAGCGCGGaUGGa -5'
26229 5' -59.4 NC_005342.2 + 7578 0.66 0.443624
Target:  5'- --cCUGCGUGaugaugcccuGCGAUUGCGUCUGCa- -3'
miRNA:   3'- acaGACGCGC----------CGCUAGCGCGGAUGga -5'
26229 5' -59.4 NC_005342.2 + 41455 0.66 0.434052
Target:  5'- -aUCgGCGCgGGCGAcucgCGCGCCggGCUa -3'
miRNA:   3'- acAGaCGCG-CCGCUa---GCGCGGa-UGGa -5'
26229 5' -59.4 NC_005342.2 + 39107 0.66 0.434052
Target:  5'- ---gUGCGCGGCuaacCGCGCCgcaGCCg -3'
miRNA:   3'- acagACGCGCCGcua-GCGCGGa--UGGa -5'
26229 5' -59.4 NC_005342.2 + 3204 0.66 0.428367
Target:  5'- cGUCUGCGCGccgccagcgccacgcGCGGUCGaGCg-GCCg -3'
miRNA:   3'- aCAGACGCGC---------------CGCUAGCgCGgaUGGa -5'
26229 5' -59.4 NC_005342.2 + 8200 0.66 0.424601
Target:  5'- aUGUCuUGCGaGGCGucCGCGCCguggcGCCg -3'
miRNA:   3'- -ACAG-ACGCgCCGCuaGCGCGGa----UGGa -5'
26229 5' -59.4 NC_005342.2 + 27353 0.66 0.424601
Target:  5'- cGaCUGCGCgaGGcCGAgcCGCGCCUGCa- -3'
miRNA:   3'- aCaGACGCG--CC-GCUa-GCGCGGAUGga -5'
26229 5' -59.4 NC_005342.2 + 45680 0.66 0.424601
Target:  5'- aUGUgU-CGCGGCGAggCGUggugucccgGCCUGCCa -3'
miRNA:   3'- -ACAgAcGCGCCGCUa-GCG---------CGGAUGGa -5'
26229 5' -59.4 NC_005342.2 + 28646 0.67 0.415273
Target:  5'- cGUCggUGCGCaGCGG-CGCGCCgagGCa- -3'
miRNA:   3'- aCAG--ACGCGcCGCUaGCGCGGa--UGga -5'
26229 5' -59.4 NC_005342.2 + 41688 0.67 0.406073
Target:  5'- gUGUCgccaGUGCgGGCGAcCGCGCCaagGCUUc -3'
miRNA:   3'- -ACAGa---CGCG-CCGCUaGCGCGGa--UGGA- -5'
26229 5' -59.4 NC_005342.2 + 44764 0.67 0.397001
Target:  5'- cGUCaucgggGCG-GGCGG-CGCGCCggGCCg -3'
miRNA:   3'- aCAGa-----CGCgCCGCUaGCGCGGa-UGGa -5'
26229 5' -59.4 NC_005342.2 + 27420 0.67 0.397001
Target:  5'- --cCUGCGCGGCGA-CG-GCUgucgACCa -3'
miRNA:   3'- acaGACGCGCCGCUaGCgCGGa---UGGa -5'
26229 5' -59.4 NC_005342.2 + 8655 0.67 0.387174
Target:  5'- cGUCgGCGUucagcacGGCGAaCGUGCCgACCg -3'
miRNA:   3'- aCAGaCGCG-------CCGCUaGCGCGGaUGGa -5'
26229 5' -59.4 NC_005342.2 + 36793 0.67 0.379254
Target:  5'- gGUUUGCGCGGau-UCGCG-CUAUCg -3'
miRNA:   3'- aCAGACGCGCCgcuAGCGCgGAUGGa -5'
26229 5' -59.4 NC_005342.2 + 15251 0.67 0.376638
Target:  5'- cGUgCUGCgGCGGCGcgGUCagcaucagcaccggGCGCUUGCCg -3'
miRNA:   3'- aCA-GACG-CGCCGC--UAG--------------CGCGGAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.