miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26229 5' -59.4 NC_005342.2 + 25397 0.67 0.370582
Target:  5'- ----cGUcCGGCGAUCGCGCUUGCa- -3'
miRNA:   3'- acagaCGcGCCGCUAGCGCGGAUGga -5'
26229 5' -59.4 NC_005342.2 + 41284 0.67 0.368007
Target:  5'- cGUCgccaaUGCGCcccgcacgugaagcGGCGGaugCGCGCCUGCUc -3'
miRNA:   3'- aCAG-----ACGCG--------------CCGCUa--GCGCGGAUGGa -5'
26229 5' -59.4 NC_005342.2 + 28487 0.68 0.362047
Target:  5'- cGUCgaccgcgcggGuCGCGGCGG-CGCGgCUGCCc -3'
miRNA:   3'- aCAGa---------C-GCGCCGCUaGCGCgGAUGGa -5'
26229 5' -59.4 NC_005342.2 + 19612 0.68 0.362047
Target:  5'- gGUCacggcgaGCGCGGCGAgCGCgGCCgacgcugGCCg -3'
miRNA:   3'- aCAGa------CGCGCCGCUaGCG-CGGa------UGGa -5'
26229 5' -59.4 NC_005342.2 + 2416 0.68 0.353649
Target:  5'- gGUacgGCGCGGCGAacacuugCGCGCCaaacgaaGCCg -3'
miRNA:   3'- aCAga-CGCGCCGCUa------GCGCGGa------UGGa -5'
26229 5' -59.4 NC_005342.2 + 37133 0.68 0.353649
Target:  5'- gGUUUGCGCGGCGugcaCGUGUaCUGCg- -3'
miRNA:   3'- aCAGACGCGCCGCua--GCGCG-GAUGga -5'
26229 5' -59.4 NC_005342.2 + 35803 0.68 0.353649
Target:  5'- ---gUGaCGCGGCGcugCGCGCCaGCCa -3'
miRNA:   3'- acagAC-GCGCCGCua-GCGCGGaUGGa -5'
26229 5' -59.4 NC_005342.2 + 14365 0.68 0.32929
Target:  5'- cGcCUGCGCggucgccaugaaGGCGAguuucUCGCGCC-GCCa -3'
miRNA:   3'- aCaGACGCG------------CCGCU-----AGCGCGGaUGGa -5'
26229 5' -59.4 NC_005342.2 + 17905 0.69 0.313751
Target:  5'- cUGUCcgccgGUGCGGCcg-CGCGCCUGgCg -3'
miRNA:   3'- -ACAGa----CGCGCCGcuaGCGCGGAUgGa -5'
26229 5' -59.4 NC_005342.2 + 44146 0.69 0.313751
Target:  5'- uUGcCgGCGCGuGCGAggCGCuugGCCUGCCg -3'
miRNA:   3'- -ACaGaCGCGC-CGCUa-GCG---CGGAUGGa -5'
26229 5' -59.4 NC_005342.2 + 13683 0.69 0.298774
Target:  5'- ---aUGCGCGGCGAUUGUGgucggcaacguuUCUACCg -3'
miRNA:   3'- acagACGCGCCGCUAGCGC------------GGAUGGa -5'
26229 5' -59.4 NC_005342.2 + 905 0.69 0.298774
Target:  5'- cGUUUGCGCuuuGGCGGcUCGgGCuCUGCUUg -3'
miRNA:   3'- aCAGACGCG---CCGCU-AGCgCG-GAUGGA- -5'
26229 5' -59.4 NC_005342.2 + 32253 0.69 0.298774
Target:  5'- cGUC-GCGCGGCGcgcUCGCGUCgAUCa -3'
miRNA:   3'- aCAGaCGCGCCGCu--AGCGCGGaUGGa -5'
26229 5' -59.4 NC_005342.2 + 2887 0.69 0.291495
Target:  5'- cGUgCUGCGCGGCcGUCGUaaccgucaGCgUGCCg -3'
miRNA:   3'- aCA-GACGCGCCGcUAGCG--------CGgAUGGa -5'
26229 5' -59.4 NC_005342.2 + 13877 0.69 0.284356
Target:  5'- cGggCUGCGCGGCGGccgUCGCGaUCguaGCCg -3'
miRNA:   3'- aCa-GACGCGCCGCU---AGCGC-GGa--UGGa -5'
26229 5' -59.4 NC_005342.2 + 42773 0.69 0.284356
Target:  5'- aGUUUGCGaCGGUGccgacgcCGCGCCUGCa- -3'
miRNA:   3'- aCAGACGC-GCCGCua-----GCGCGGAUGga -5'
26229 5' -59.4 NC_005342.2 + 40870 0.69 0.284356
Target:  5'- aGUUUGCGCuGCGAUUGCaugCUGCCg -3'
miRNA:   3'- aCAGACGCGcCGCUAGCGcg-GAUGGa -5'
26229 5' -59.4 NC_005342.2 + 11190 0.69 0.277355
Target:  5'- cGUCaUGUGC-GCGAUCGCGCUgcuguCCa -3'
miRNA:   3'- aCAG-ACGCGcCGCUAGCGCGGau---GGa -5'
26229 5' -59.4 NC_005342.2 + 36001 0.69 0.277355
Target:  5'- cGUcCUGCGCcauGCGAUaCGCGCCgcCCg -3'
miRNA:   3'- aCA-GACGCGc--CGCUA-GCGCGGauGGa -5'
26229 5' -59.4 NC_005342.2 + 8962 0.7 0.268461
Target:  5'- ---gUGCGCGGCGGcgaccgacgcgcguUCGCGgCUUGCCa -3'
miRNA:   3'- acagACGCGCCGCU--------------AGCGC-GGAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.