Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149342 | 1.11 | 0.000603 |
Target: 5'- aAGGGGCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCCCCGGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149592 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149412 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149448 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149484 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149520 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149556 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149628 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149376 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149664 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 3024 | 0.81 | 0.085441 |
Target: 5'- uGGGuGGCCCGGCAgcaggUGGCGGUcGuAGCCCCg -3' miRNA: 3'- -UCC-CCGGGUCGU-----AUCGUCA-C-UCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 1441 | 0.78 | 0.142907 |
Target: 5'- cGGGGCUCGGC--GGCGGgGAGCCUCg -3' miRNA: 3'- uCCCCGGGUCGuaUCGUCaCUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 2687 | 0.76 | 0.197424 |
Target: 5'- cGGGGCCCucGGC-UGGCA-UGGGUCCCa -3' miRNA: 3'- uCCCCGGG--UCGuAUCGUcACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 34368 | 0.72 | 0.337773 |
Target: 5'- cAGGGGCaagagCGGCA-AGCGGcgcuccGAGCCCCu -3' miRNA: 3'- -UCCCCGg----GUCGUaUCGUCa-----CUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 1480 | 0.72 | 0.345286 |
Target: 5'- cAGGGGCUCGGCcucGGCGucGGGCUCCa -3' miRNA: 3'- -UCCCCGGGUCGua-UCGUcaCUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 88428 | 0.71 | 0.376523 |
Target: 5'- gGGGGGCUUGGCGUGGUGGguacGGCUCUa -3' miRNA: 3'- -UCCCCGGGUCGUAUCGUCac--UCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 134602 | 0.71 | 0.40117 |
Target: 5'- uGGGGGUCCcuCGaAGCGGUGcGCCCg -3' miRNA: 3'- -UCCCCGGGucGUaUCGUCACuCGGGg -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 8665 | 0.71 | 0.408761 |
Target: 5'- cGGGGGCCaggGGCGUucuGCGccccgccGUGGcGCCCCg -3' miRNA: 3'- -UCCCCGGg--UCGUAu--CGU-------CACU-CGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 105130 | 0.7 | 0.435583 |
Target: 5'- cGGGGCCgCGGCGggggucucuacGGCAGgcuuuggGGGCUCCu -3' miRNA: 3'- uCCCCGG-GUCGUa----------UCGUCa------CUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 3580 | 0.7 | 0.462481 |
Target: 5'- uGGGGUCCAGUccggGGaCGGcgGAcGCCCCg -3' miRNA: 3'- uCCCCGGGUCGua--UC-GUCa-CU-CGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home