Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 105130 | 0.7 | 0.435583 |
Target: 5'- cGGGGCCgCGGCGggggucucuacGGCAGgcuuuggGGGCUCCu -3' miRNA: 3'- uCCCCGG-GUCGUa----------UCGUCa------CUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 115429 | 0.66 | 0.675626 |
Target: 5'- -cGGGCuCCAGCGUGGauaucguugucGUGuAGUCCCg -3' miRNA: 3'- ucCCCG-GGUCGUAUCgu---------CAC-UCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 129811 | 0.66 | 0.657628 |
Target: 5'- aGGGGGUCCAGuCGUAGacauGGUucGCCUg -3' miRNA: 3'- -UCCCCGGGUC-GUAUCg---UCAcuCGGGg -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 133270 | 0.69 | 0.47164 |
Target: 5'- gAGGGGCUCuGCGgGGCGuuuuGCCCCa -3' miRNA: 3'- -UCCCCGGGuCGUaUCGUcacuCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 134602 | 0.71 | 0.40117 |
Target: 5'- uGGGGGUCCcuCGaAGCGGUGcGCCCg -3' miRNA: 3'- -UCCCCGGGucGUaUCGUCACuCGGGg -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 136302 | 0.67 | 0.587434 |
Target: 5'- cGGGGCUggCGGCcuugGGCGGUGgcAGCgCCa -3' miRNA: 3'- uCCCCGG--GUCGua--UCGUCAC--UCGgGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 146196 | 0.69 | 0.48089 |
Target: 5'- cAGGaauuGGCCaccgAGCAUAGCGuGUGuagcGCCCCg -3' miRNA: 3'- -UCC----CCGGg---UCGUAUCGU-CACu---CGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 148642 | 0.67 | 0.601426 |
Target: 5'- cGGGGCgCAGCAUacaggccggcuauucAGCGG-GGGCgcacagCCCa -3' miRNA: 3'- uCCCCGgGUCGUA---------------UCGUCaCUCG------GGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 148892 | 0.68 | 0.547852 |
Target: 5'- uGGGaaaCCCAGCGaguugggaaaucUAGUGGgcUGGGCCCCa -3' miRNA: 3'- uCCCc--GGGUCGU------------AUCGUC--ACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149342 | 1.11 | 0.000603 |
Target: 5'- aAGGGGCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCCCCGGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149376 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149412 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149448 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149484 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149520 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149556 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149592 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149628 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
|||||||
2623 | 3' | -60.7 | NC_001491.2 | + | 149664 | 0.87 | 0.031994 |
Target: 5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home