miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2623 5' -57.4 NC_001491.2 + 91044 0.66 0.842686
Target:  5'- cUGuAGCCUUagAGCAUGucaaaGGUGAGCCCc -3'
miRNA:   3'- cAC-UCGGGG--UCGUAUcg---UCACUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 124605 0.66 0.842686
Target:  5'- --cGGCCugcuaauucacaCCAGCGUcGGCGGUGAGCa- -3'
miRNA:   3'- cacUCGG------------GGUCGUA-UCGUCACUCGgg -5'
2623 5' -57.4 NC_001491.2 + 2835 0.66 0.834447
Target:  5'- cUGGGCCgCCGGCuccaggGGCucgGAGCgCCg -3'
miRNA:   3'- cACUCGG-GGUCGua----UCGucaCUCG-GG- -5'
2623 5' -57.4 NC_001491.2 + 41163 0.66 0.834447
Target:  5'- --uAGCCCUAGCGUuAGCGcu-AGCCCu -3'
miRNA:   3'- cacUCGGGGUCGUA-UCGUcacUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 115429 0.66 0.824315
Target:  5'- -cGGGCUCCAGCGUGGauaucguugucGUGuAGUCCc -3'
miRNA:   3'- caCUCGGGGUCGUAUCgu---------CAC-UCGGG- -5'
2623 5' -57.4 NC_001491.2 + 148891 0.66 0.817418
Target:  5'- uUGGGaaaCCCAGCGaguugggaaaucUAGUGGgcUGGGCCCc -3'
miRNA:   3'- cACUCg--GGGUCGU------------AUCGUC--ACUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 2191 0.66 0.817418
Target:  5'- -gGGGCCCCGGUccAGUuGccGGCCCa -3'
miRNA:   3'- caCUCGGGGUCGuaUCGuCacUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 10459 0.66 0.816548
Target:  5'- cUGGGCCgcgcuacUCAaCAUGGCGGgcgccGAGCCCg -3'
miRNA:   3'- cACUCGG-------GGUcGUAUCGUCa----CUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 34015 0.66 0.814803
Target:  5'- --cGGUCCCAGCAgcccUcaucguccucgcccGGCGGcGAGCCCu -3'
miRNA:   3'- cacUCGGGGUCGU----A--------------UCGUCaCUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 3848 0.66 0.808644
Target:  5'- cUGGGCCggguagCCGGCcacggcGGCgAGUGAGUCCg -3'
miRNA:   3'- cACUCGG------GGUCGua----UCG-UCACUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 35805 0.66 0.808644
Target:  5'- -cGAGCCCC-GCG-GGUcgacuGG-GAGCCCg -3'
miRNA:   3'- caCUCGGGGuCGUaUCG-----UCaCUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 70191 0.66 0.799708
Target:  5'- cUGAGCCCUGGCccuGCccauGUcGGCCCu -3'
miRNA:   3'- cACUCGGGGUCGuauCGu---CAcUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 4660 0.66 0.799708
Target:  5'- -aGGGCUCCGGCccGGCGGaGaAGCCa -3'
miRNA:   3'- caCUCGGGGUCGuaUCGUCaC-UCGGg -5'
2623 5' -57.4 NC_001491.2 + 146203 0.67 0.790618
Target:  5'- --uGGCCaCCgAGCAUAGCGuGUGuagcGCCCc -3'
miRNA:   3'- cacUCGG-GG-UCGUAUCGU-CACu---CGGG- -5'
2623 5' -57.4 NC_001491.2 + 134604 0.67 0.790618
Target:  5'- -gGGGUCCCu-CGaAGCGGUGcGCCCg -3'
miRNA:   3'- caCUCGGGGucGUaUCGUCACuCGGG- -5'
2623 5' -57.4 NC_001491.2 + 4873 0.67 0.781384
Target:  5'- gGUGgcGGCCCCAGCGgccgGGCgauccccuccggAGgacGGCCCg -3'
miRNA:   3'- -CAC--UCGGGGUCGUa---UCG------------UCac-UCGGG- -5'
2623 5' -57.4 NC_001491.2 + 3428 0.67 0.772015
Target:  5'- -gGAGCCCaGGCGgugGGUAGggucaGAGUCCc -3'
miRNA:   3'- caCUCGGGgUCGUa--UCGUCa----CUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 1457 0.67 0.743185
Target:  5'- -gGAGCCUCGGUgaugGGCAGcaccagGGGCUCg -3'
miRNA:   3'- caCUCGGGGUCGua--UCGUCa-----CUCGGG- -5'
2623 5' -57.4 NC_001491.2 + 111048 0.67 0.743185
Target:  5'- uGUGcGCCUCAG-AUAGCAGcgcuGCCCa -3'
miRNA:   3'- -CACuCGGGGUCgUAUCGUCacu-CGGG- -5'
2623 5' -57.4 NC_001491.2 + 2251 0.67 0.743185
Target:  5'- -aGGGCCgCCAGCAgcGCcGaGAGUCCc -3'
miRNA:   3'- caCUCGG-GGUCGUauCGuCaCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.