miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26230 3' -62.5 NC_005342.2 + 39016 0.66 0.332927
Target:  5'- -cGGcCGCaCGAuCCAGCCCGcgcaCGCGAu -3'
miRNA:   3'- uaCC-GCGaGCU-GGUCGGGCca--GCGCU- -5'
26230 3' -62.5 NC_005342.2 + 8623 0.66 0.332927
Target:  5'- -cGGCGCggCGcCCGGCuuGcUCGUGAc -3'
miRNA:   3'- uaCCGCGa-GCuGGUCGggCcAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 19225 0.66 0.332927
Target:  5'- -cGGCGCUCGAgcaauaCGGgCUGGaCGUGAc -3'
miRNA:   3'- uaCCGCGAGCUg-----GUCgGGCCaGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 44161 0.66 0.332927
Target:  5'- -aGGCGCUUGGCCuGCC-GGU-GCa- -3'
miRNA:   3'- uaCCGCGAGCUGGuCGGgCCAgCGcu -5'
26230 3' -62.5 NC_005342.2 + 38343 0.66 0.332927
Target:  5'- cGUGGUGCccguUCuGAUCGGCCCGG--GCGGc -3'
miRNA:   3'- -UACCGCG----AG-CUGGUCGGGCCagCGCU- -5'
26230 3' -62.5 NC_005342.2 + 36062 0.66 0.325173
Target:  5'- aAUGGCGCgCGcGCCGcugcgcauGCCgGGcCGCGAc -3'
miRNA:   3'- -UACCGCGaGC-UGGU--------CGGgCCaGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 6678 0.66 0.325173
Target:  5'- aAUGGCGCgUUGA--AG-CCGGUCGUGAg -3'
miRNA:   3'- -UACCGCG-AGCUggUCgGGCCAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 99 0.66 0.325173
Target:  5'- -cGGCGCg-GugCGcgcGCCCGGUUGCc- -3'
miRNA:   3'- uaCCGCGagCugGU---CGGGCCAGCGcu -5'
26230 3' -62.5 NC_005342.2 + 38109 0.66 0.317554
Target:  5'- -cGGCGUgacGCCGGCCaCGGUCaagacgGCGAu -3'
miRNA:   3'- uaCCGCGagcUGGUCGG-GCCAG------CGCU- -5'
26230 3' -62.5 NC_005342.2 + 6477 0.66 0.317554
Target:  5'- ---uCGCUCGugCagacccauAGCCCGGcgCGCGAg -3'
miRNA:   3'- uaccGCGAGCugG--------UCGGGCCa-GCGCU- -5'
26230 3' -62.5 NC_005342.2 + 15450 0.66 0.30272
Target:  5'- ---cCGCUCGACau-CCCGGUCGCa- -3'
miRNA:   3'- uaccGCGAGCUGgucGGGCCAGCGcu -5'
26230 3' -62.5 NC_005342.2 + 11041 0.66 0.295506
Target:  5'- -cGGCGgaaCUCGgcACCGGCgCGcGUCGUGAg -3'
miRNA:   3'- uaCCGC---GAGC--UGGUCGgGC-CAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 27717 0.66 0.295506
Target:  5'- -cGGCGCgaucguaGGCCAGUCgCGGUCGa-- -3'
miRNA:   3'- uaCCGCGag-----CUGGUCGG-GCCAGCgcu -5'
26230 3' -62.5 NC_005342.2 + 30908 0.67 0.290536
Target:  5'- --cGUGCUCGacaacgccgacauuuGCCGGUugucaugCCGGUCGCGAc -3'
miRNA:   3'- uacCGCGAGC---------------UGGUCG-------GGCCAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 35809 0.67 0.281481
Target:  5'- -cGGCGCUgCGcGCCAGCCacguacgcaaGGUUgGCGAc -3'
miRNA:   3'- uaCCGCGA-GC-UGGUCGGg---------CCAG-CGCU- -5'
26230 3' -62.5 NC_005342.2 + 130 0.67 0.26144
Target:  5'- -cGGCGCgagcacaCGAUCGgcGCCUGG-CGCGAg -3'
miRNA:   3'- uaCCGCGa------GCUGGU--CGGGCCaGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 34136 0.67 0.255023
Target:  5'- --uGCGCUCGACgCGGCgCCcGUCGcCGAa -3'
miRNA:   3'- uacCGCGAGCUG-GUCG-GGcCAGC-GCU- -5'
26230 3' -62.5 NC_005342.2 + 13930 0.68 0.219204
Target:  5'- uUGGCGaCUUcgGGCCGGCggCCGGUgcgCGCGAg -3'
miRNA:   3'- uACCGC-GAG--CUGGUCG--GGCCA---GCGCU- -5'
26230 3' -62.5 NC_005342.2 + 28022 0.68 0.213669
Target:  5'- -cGGCgGCUCG-CC-GCCCGG-CGCGc -3'
miRNA:   3'- uaCCG-CGAGCuGGuCGGGCCaGCGCu -5'
26230 3' -62.5 NC_005342.2 + 17489 0.68 0.213669
Target:  5'- --uGCGCUCGACCGcaccgaucugcuGCagCCGGUCGCa- -3'
miRNA:   3'- uacCGCGAGCUGGU------------CG--GGCCAGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.