miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26230 3' -62.5 NC_005342.2 + 28616 0.7 0.164674
Target:  5'- --cGCGCUCGGCgCAGgCCGG-CGCGu -3'
miRNA:   3'- uacCGCGAGCUG-GUCgGGCCaGCGCu -5'
26230 3' -62.5 NC_005342.2 + 11345 0.72 0.129464
Target:  5'- --cGCGCUCGACgagcuuuucuugCAGCCCuuucaGGUCGCGGc -3'
miRNA:   3'- uacCGCGAGCUG------------GUCGGG-----CCAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 3751 0.72 0.11616
Target:  5'- cGUGGCGUUCuGAUCGGCCU--UCGCGAu -3'
miRNA:   3'- -UACCGCGAG-CUGGUCGGGccAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 37382 0.72 0.11616
Target:  5'- -cGcGCGCccgacccgcucgUCGGCCGGCCCGG-CGCGu -3'
miRNA:   3'- uaC-CGCG------------AGCUGGUCGGGCCaGCGCu -5'
26230 3' -62.5 NC_005342.2 + 45292 1.06 0.000258
Target:  5'- cAUGGCGCUCGACCAGCCCGGUCGCGAg -3'
miRNA:   3'- -UACCGCGAGCUGGUCGGGCCAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 13930 0.68 0.219204
Target:  5'- uUGGCGaCUUcgGGCCGGCggCCGGUgcgCGCGAg -3'
miRNA:   3'- uACCGC-GAG--CUGGUCG--GGCCA---GCGCU- -5'
26230 3' -62.5 NC_005342.2 + 38343 0.66 0.332927
Target:  5'- cGUGGUGCccguUCuGAUCGGCCCGG--GCGGc -3'
miRNA:   3'- -UACCGCG----AG-CUGGUCGGGCCagCGCU- -5'
26230 3' -62.5 NC_005342.2 + 19225 0.66 0.332927
Target:  5'- -cGGCGCUCGAgcaauaCGGgCUGGaCGUGAc -3'
miRNA:   3'- uaCCGCGAGCUg-----GUCgGGCCaGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 38109 0.66 0.317554
Target:  5'- -cGGCGUgacGCCGGCCaCGGUCaagacgGCGAu -3'
miRNA:   3'- uaCCGCGagcUGGUCGG-GCCAG------CGCU- -5'
26230 3' -62.5 NC_005342.2 + 30908 0.67 0.290536
Target:  5'- --cGUGCUCGacaacgccgacauuuGCCGGUugucaugCCGGUCGCGAc -3'
miRNA:   3'- uacCGCGAGC---------------UGGUCG-------GGCCAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 130 0.67 0.26144
Target:  5'- -cGGCGCgagcacaCGAUCGgcGCCUGG-CGCGAg -3'
miRNA:   3'- uaCCGCGa------GCUGGU--CGGGCCaGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 2371 0.69 0.18777
Target:  5'- -cGGCGC-CGGCgGucGCCUGGUCGCc- -3'
miRNA:   3'- uaCCGCGaGCUGgU--CGGGCCAGCGcu -5'
26230 3' -62.5 NC_005342.2 + 44161 0.66 0.332927
Target:  5'- -aGGCGCUUGGCCuGCC-GGU-GCa- -3'
miRNA:   3'- uaCCGCGAGCUGGuCGGgCCAgCGcu -5'
26230 3' -62.5 NC_005342.2 + 41070 0.69 0.197781
Target:  5'- uGUGGCGCUCGAgCAcgcGCCCGacCGCa- -3'
miRNA:   3'- -UACCGCGAGCUgGU---CGGGCcaGCGcu -5'
26230 3' -62.5 NC_005342.2 + 35809 0.67 0.281481
Target:  5'- -cGGCGCUgCGcGCCAGCCacguacgcaaGGUUgGCGAc -3'
miRNA:   3'- uaCCGCGA-GC-UGGUCGGg---------CCAG-CGCU- -5'
26230 3' -62.5 NC_005342.2 + 8623 0.66 0.332927
Target:  5'- -cGGCGCggCGcCCGGCuuGcUCGUGAc -3'
miRNA:   3'- uaCCGCGa-GCuGGUCGggCcAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 17489 0.68 0.213669
Target:  5'- --uGCGCUCGACCGcaccgaucugcuGCagCCGGUCGCa- -3'
miRNA:   3'- uacCGCGAGCUGGU------------CG--GGCCAGCGcu -5'
26230 3' -62.5 NC_005342.2 + 20444 0.71 0.140352
Target:  5'- -cGGCGCgaaGCCuGCgCCGGUCGUGAc -3'
miRNA:   3'- uaCCGCGagcUGGuCG-GGCCAGCGCU- -5'
26230 3' -62.5 NC_005342.2 + 27450 0.73 0.093299
Target:  5'- -cGGCGCggcggCGGCCGGCagCGGUUGCGc -3'
miRNA:   3'- uaCCGCGa----GCUGGUCGg-GCCAGCGCu -5'
26230 3' -62.5 NC_005342.2 + 17831 0.73 0.107031
Target:  5'- -cGGCGCgcgaauUCGGuCCGGCgCCGGUCGCu- -3'
miRNA:   3'- uaCCGCG------AGCU-GGUCG-GGCCAGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.