miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26230 5' -51.1 NC_005342.2 + 44177 0.66 0.887737
Target:  5'- -uUCGaucCAGCguccGCUgCGCAGAUCGCg -3'
miRNA:   3'- ccAGCguuGUUGa---CGA-GCGUCUAGUG- -5'
26230 5' -51.1 NC_005342.2 + 30143 0.66 0.87992
Target:  5'- cGcCGUAGCGACUGCcUCGCGc--CACg -3'
miRNA:   3'- cCaGCGUUGUUGACG-AGCGUcuaGUG- -5'
26230 5' -51.1 NC_005342.2 + 45836 0.66 0.87992
Target:  5'- cGGUgCGCGcuACGGCaaGUUCGaGGAUCACg -3'
miRNA:   3'- -CCA-GCGU--UGUUGa-CGAGCgUCUAGUG- -5'
26230 5' -51.1 NC_005342.2 + 23420 0.66 0.87992
Target:  5'- -aUCGCcaaucuCAACgucaGCguuUCGCAGAUCGCg -3'
miRNA:   3'- ccAGCGuu----GUUGa---CG---AGCGUCUAGUG- -5'
26230 5' -51.1 NC_005342.2 + 31144 0.66 0.871824
Target:  5'- uGGcCGCGACGcGCUGCUCGagcGAUacgaACg -3'
miRNA:   3'- -CCaGCGUUGU-UGACGAGCgu-CUAg---UG- -5'
26230 5' -51.1 NC_005342.2 + 30446 0.66 0.871824
Target:  5'- cGGacagUGCGAcCGGCUGCa-GCAGAUCGg -3'
miRNA:   3'- -CCa---GCGUU-GUUGACGagCGUCUAGUg -5'
26230 5' -51.1 NC_005342.2 + 43376 0.66 0.871824
Target:  5'- aGGaUCGCAACAA--GCUCGaCGGGUUg- -3'
miRNA:   3'- -CC-AGCGUUGUUgaCGAGC-GUCUAGug -5'
26230 5' -51.1 NC_005342.2 + 2855 0.66 0.871824
Target:  5'- cGUCGCGGCGGCgaggcugaUGUUgGCAGAgacgugcugCGCg -3'
miRNA:   3'- cCAGCGUUGUUG--------ACGAgCGUCUa--------GUG- -5'
26230 5' -51.1 NC_005342.2 + 11302 0.66 0.871824
Target:  5'- uGGUCGCGcGCGAUgaagGCggCGCGGuucgucGUCACc -3'
miRNA:   3'- -CCAGCGU-UGUUGa---CGa-GCGUC------UAGUG- -5'
26230 5' -51.1 NC_005342.2 + 36556 0.66 0.871824
Target:  5'- cGGUCgaagGCGACGuGCUGCggcauuucaUCGCGGGcCGCg -3'
miRNA:   3'- -CCAG----CGUUGU-UGACG---------AGCGUCUaGUG- -5'
26230 5' -51.1 NC_005342.2 + 26384 0.66 0.868509
Target:  5'- cGGUCGUGAUAgcgcuugGCUGCagCGCGGAaagugggauaggcgUCAUg -3'
miRNA:   3'- -CCAGCGUUGU-------UGACGa-GCGUCU--------------AGUG- -5'
26230 5' -51.1 NC_005342.2 + 11879 0.66 0.863457
Target:  5'- cGUCGCGGCccGGCaUGCgcaGCGGcgCGCg -3'
miRNA:   3'- cCAGCGUUG--UUG-ACGag-CGUCuaGUG- -5'
26230 5' -51.1 NC_005342.2 + 3704 0.66 0.863457
Target:  5'- aGGUgCGCGAgAAgUGCUCggGguGAUCGg -3'
miRNA:   3'- -CCA-GCGUUgUUgACGAG--CguCUAGUg -5'
26230 5' -51.1 NC_005342.2 + 22675 0.66 0.854826
Target:  5'- cGGUUGCGACGccgaacacGCUGaaaaucuaUCaGCAGGUCAa -3'
miRNA:   3'- -CCAGCGUUGU--------UGACg-------AG-CGUCUAGUg -5'
26230 5' -51.1 NC_005342.2 + 32003 0.66 0.853949
Target:  5'- gGGUCgGCGGCGAUgucgacgUGCgucaGCAGGUCGg -3'
miRNA:   3'- -CCAG-CGUUGUUG-------ACGag--CGUCUAGUg -5'
26230 5' -51.1 NC_005342.2 + 33125 0.67 0.845941
Target:  5'- cGG-CGCGGCGACUGCgCGCcGAa--- -3'
miRNA:   3'- -CCaGCGUUGUUGACGaGCGuCUagug -5'
26230 5' -51.1 NC_005342.2 + 26084 0.67 0.845941
Target:  5'- gGGgcuaugCGCAGCGAaccaGCUUGUAGcgCGCg -3'
miRNA:   3'- -CCa-----GCGUUGUUga--CGAGCGUCuaGUG- -5'
26230 5' -51.1 NC_005342.2 + 36089 0.67 0.845941
Target:  5'- gGGcCGCGACGACaaggUGCUCGCGcccGUCuCg -3'
miRNA:   3'- -CCaGCGUUGUUG----ACGAGCGUc--UAGuG- -5'
26230 5' -51.1 NC_005342.2 + 35931 0.67 0.836811
Target:  5'- uGGUCGUAGCGAaUGCcUUGC--GUCGCg -3'
miRNA:   3'- -CCAGCGUUGUUgACG-AGCGucUAGUG- -5'
26230 5' -51.1 NC_005342.2 + 560 0.67 0.827445
Target:  5'- --aCGCAuuuuuuCAugUGCUCGCgcGGAUCGa -3'
miRNA:   3'- ccaGCGUu-----GUugACGAGCG--UCUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.