miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26231 3' -55.5 NC_005342.2 + 25312 0.66 0.622501
Target:  5'- -cCGGCgacgGCCGCGACGUACGUaacggucgcgUUGCc -3'
miRNA:   3'- uaGUCGa---UGGUGUUGCGUGCG----------GACGu -5'
26231 3' -55.5 NC_005342.2 + 30836 0.66 0.622501
Target:  5'- --gAGCUGCUGCu-CGCGCGCgaGCc -3'
miRNA:   3'- uagUCGAUGGUGuuGCGUGCGgaCGu -5'
26231 3' -55.5 NC_005342.2 + 780 0.66 0.615694
Target:  5'- gAUUGGCgcCCGCGagcggcgacguagcuGCGguCGCCUGCGc -3'
miRNA:   3'- -UAGUCGauGGUGU---------------UGCguGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 43083 0.66 0.611159
Target:  5'- -aCGGCgcacUAUCGCAGCGCGCGCUa--- -3'
miRNA:   3'- uaGUCG----AUGGUGUUGCGUGCGGacgu -5'
26231 3' -55.5 NC_005342.2 + 30976 0.66 0.611159
Target:  5'- aGUCgAGCgcgGCgACGGCGUAUGCC-GCGa -3'
miRNA:   3'- -UAG-UCGa--UGgUGUUGCGUGCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 36925 0.66 0.611159
Target:  5'- -cCAGUUccGCCGCGACGCugugGCCcGCAc -3'
miRNA:   3'- uaGUCGA--UGGUGUUGCGug--CGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 44538 0.66 0.599837
Target:  5'- cUCGGCgaggACauggACGACGCugGCC-GCGa -3'
miRNA:   3'- uAGUCGa---UGg---UGUUGCGugCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 32174 0.66 0.599837
Target:  5'- uUCAGC-GCCGCGACGa--GCC-GCAg -3'
miRNA:   3'- uAGUCGaUGGUGUUGCgugCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 41358 0.66 0.599837
Target:  5'- uGUCgGGCgcggGCUGCGGcCGUACGCCgGCAa -3'
miRNA:   3'- -UAG-UCGa---UGGUGUU-GCGUGCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 3351 0.66 0.599837
Target:  5'- gAUCAGCUGgCGCAGCGa--GUCggGCAg -3'
miRNA:   3'- -UAGUCGAUgGUGUUGCgugCGGa-CGU- -5'
26231 3' -55.5 NC_005342.2 + 42772 0.66 0.587417
Target:  5'- --gAGUUugCGacggugcCGACGcCGCGCCUGCAg -3'
miRNA:   3'- uagUCGAugGU-------GUUGC-GUGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 14845 0.66 0.57729
Target:  5'- --gAGCUGCUGCAG-GCGCGUCaGCAg -3'
miRNA:   3'- uagUCGAUGGUGUUgCGUGCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 32802 0.66 0.57729
Target:  5'- gGUCAGCgugAUCACGAgcccuuCGuCGCGCCcuUGCAg -3'
miRNA:   3'- -UAGUCGa--UGGUGUU------GC-GUGCGG--ACGU- -5'
26231 3' -55.5 NC_005342.2 + 21168 0.66 0.57729
Target:  5'- uUCGcGCUGCCGCAG-GC-CGgCCUGCu -3'
miRNA:   3'- uAGU-CGAUGGUGUUgCGuGC-GGACGu -5'
26231 3' -55.5 NC_005342.2 + 12955 0.66 0.57729
Target:  5'- gAUCAGCUcggcgcgcAUCGCAaaucgacguucGCGCcgggcaucaACGCCUGCGc -3'
miRNA:   3'- -UAGUCGA--------UGGUGU-----------UGCG---------UGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 41454 0.66 0.57729
Target:  5'- gAUCGGCgcggGCgACu-CGCGCGCCggGCu -3'
miRNA:   3'- -UAGUCGa---UGgUGuuGCGUGCGGa-CGu -5'
26231 3' -55.5 NC_005342.2 + 4850 0.67 0.566085
Target:  5'- ---cGCUGCCGCcgcugaccauguAGCGCGCG-CUGCGa -3'
miRNA:   3'- uaguCGAUGGUG------------UUGCGUGCgGACGU- -5'
26231 3' -55.5 NC_005342.2 + 4818 0.67 0.566085
Target:  5'- cGUCAGCccgACCcgAGCGUcUGCCUGCGc -3'
miRNA:   3'- -UAGUCGa--UGGugUUGCGuGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 45102 0.67 0.566085
Target:  5'- cAUCAGCcucgccGCCGCGACGUcguucgcaaACGCC-GCGa -3'
miRNA:   3'- -UAGUCGa-----UGGUGUUGCG---------UGCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 12647 0.67 0.566085
Target:  5'- gGUguGCUGCuCACAGCauguGgACuGCCUGCAu -3'
miRNA:   3'- -UAguCGAUG-GUGUUG----CgUG-CGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.