miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26231 3' -55.5 NC_005342.2 + 3304 0.67 0.564967
Target:  5'- -aUAGCUGCCGacuucuuCGGCGCGCGCgacGCAu -3'
miRNA:   3'- uaGUCGAUGGU-------GUUGCGUGCGga-CGU- -5'
26231 3' -55.5 NC_005342.2 + 6566 0.67 0.554936
Target:  5'- cAUC-GCcGCCACGGCGCGcCGCCcaGCGc -3'
miRNA:   3'- -UAGuCGaUGGUGUUGCGU-GCGGa-CGU- -5'
26231 3' -55.5 NC_005342.2 + 18264 0.67 0.554936
Target:  5'- uUCGGCgcugGCgGCAGCGCggccGCGCUcgGCAc -3'
miRNA:   3'- uAGUCGa---UGgUGUUGCG----UGCGGa-CGU- -5'
26231 3' -55.5 NC_005342.2 + 35185 0.67 0.553824
Target:  5'- cGUCGGC-ACCGuCAACGgGCcggugagcgugccGCCUGCGa -3'
miRNA:   3'- -UAGUCGaUGGU-GUUGCgUG-------------CGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 43148 0.67 0.553824
Target:  5'- gGUCgGGCUgacggacGCgCGCAuCGCGCGCUUGCGc -3'
miRNA:   3'- -UAG-UCGA-------UG-GUGUuGCGUGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 17226 0.67 0.551603
Target:  5'- -gCAGCaGCUGCAGCGCACcuaucgugcgagcaGCCcGCAg -3'
miRNA:   3'- uaGUCGaUGGUGUUGCGUG--------------CGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 37769 0.67 0.543852
Target:  5'- -gCAGCUuugaugccgacgGCCGCAugcGCGUGCGCgaCUGCAu -3'
miRNA:   3'- uaGUCGA------------UGGUGU---UGCGUGCG--GACGU- -5'
26231 3' -55.5 NC_005342.2 + 20719 0.67 0.543852
Target:  5'- -gCGGUgAUgACGGCGCGCGCgCUGCc -3'
miRNA:   3'- uaGUCGaUGgUGUUGCGUGCG-GACGu -5'
26231 3' -55.5 NC_005342.2 + 14973 0.67 0.543852
Target:  5'- gGUUAGCggACCGcCGACGCcgACGCC-GCGa -3'
miRNA:   3'- -UAGUCGa-UGGU-GUUGCG--UGCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 46875 0.67 0.532842
Target:  5'- uUUGGCgcgccGCCGCAGCGUGCGCCg--- -3'
miRNA:   3'- uAGUCGa----UGGUGUUGCGUGCGGacgu -5'
26231 3' -55.5 NC_005342.2 + 33737 0.67 0.532842
Target:  5'- cUCGGCUcgaaagagGCgCGC-GCGCACGCCgucGCAu -3'
miRNA:   3'- uAGUCGA--------UG-GUGuUGCGUGCGGa--CGU- -5'
26231 3' -55.5 NC_005342.2 + 26102 0.67 0.532842
Target:  5'- -cCAGCUugUA--GCGCGCGCC-GCGu -3'
miRNA:   3'- uaGUCGAugGUguUGCGUGCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 45143 0.67 0.521912
Target:  5'- uUCGGCggcGCCgACGGCGCAuuCGCgaGCAu -3'
miRNA:   3'- uAGUCGa--UGG-UGUUGCGU--GCGgaCGU- -5'
26231 3' -55.5 NC_005342.2 + 35987 0.67 0.521912
Target:  5'- -gCAGCgACaCGCGACGUccuGCGCCaUGCGa -3'
miRNA:   3'- uaGUCGaUG-GUGUUGCG---UGCGG-ACGU- -5'
26231 3' -55.5 NC_005342.2 + 31549 0.67 0.521912
Target:  5'- gAUCAGCguguagaGCUGCAGCGgGuuguuUGCCUGCAu -3'
miRNA:   3'- -UAGUCGa------UGGUGUUGCgU-----GCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 43858 0.67 0.518651
Target:  5'- cUCGGCcGCUaucucgacgauccgACGACGCGCGCCUacuGCu -3'
miRNA:   3'- uAGUCGaUGG--------------UGUUGCGUGCGGA---CGu -5'
26231 3' -55.5 NC_005342.2 + 44667 0.67 0.511071
Target:  5'- -gCAGCUAUCcuGCGcGCGCACGUCgGCGg -3'
miRNA:   3'- uaGUCGAUGG--UGU-UGCGUGCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 604 0.67 0.511071
Target:  5'- cUCGGCgACgCGCAGCuGaaugaACGCCUGCGg -3'
miRNA:   3'- uAGUCGaUG-GUGUUG-Cg----UGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 18799 0.68 0.500324
Target:  5'- uAUCGcGCgGCCGCAGgGCGCGUgCUGCu -3'
miRNA:   3'- -UAGU-CGaUGGUGUUgCGUGCG-GACGu -5'
26231 3' -55.5 NC_005342.2 + 32624 0.68 0.500324
Target:  5'- uUCGGCguUCAgcGCGCGCGUCUGCGc -3'
miRNA:   3'- uAGUCGauGGUguUGCGUGCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.